Pseudogene.org Site Map

• Summary
• About
  • Pseudogene Background
  • Publications
  • Scientific American Article (2006)
  • Contact Information
• Database
  • Eukaryote Data
  • Prokaryote Data
  • Pseudomotifs
  • Composition Analysis
  • Download Source Code
• PseudoFAM
  • Pseudogene Families in Eukaryotic Genomes (Genome View)
  • Pseudogene Families in Protein Families (Family View)
• Pipeline
  • Pipeline Source Code
  • Pipeline Readme
• Pseudogene Browser
  • Human Pseudogene Browser
  • Mouse Pseudogene Browser
  • Worm Pseudogene Browser
• Human Pseudogene Data Sets
• Mouse Pseudogene Data Sets
• ENCODE
• Publication Data
  • Human Pseudogene Data
    • Computational Approach for Identifying Pseudogenes in the ENCODE Regions ( Zheng et al. Genome Biol (2006) )
    • Comprehensive Survey of Processed Pseudogenes in the Human Genome ( Zhang et al. Genome Res (2003) )
    • Analysis of Chromosome 22 Pseudogenes and Transcription ( Zheng et al. JMB (2005) )
    • Analysis of Ribosomal Protein Pseudogenes ( Zhang et al. Genome Res (2002) )
    • Patterns of nucleotide substitution, insertion and deletion in the human genome ( Zhang et al. NAR (2003) )
    • Analysis of Human Mitochondrial Ribosomal Protein (MRP) Pseudogenes ( Zhang et al. Genome Res (2002) )
    • Analysis of Human Cytochrome c (cyc) Pseudogenes ( Zhang et al. Gene (2003) )
    • Pseudogene Annotations for Chromosomes 21 and 22 ( Harrison et al. Genome Res (2002) )
      • pseudogenes whose primary match is a Swiss-Prot protein - chr21, chr22
      • pseudogenes whose primary match is an Ensembl protein - chr21, chr22
      • pseudogenes which are primarily Riken Centre or Sanger Centre annotations but are also detected by our procedures - chr21, chr22
      • a parseable table summarizing the above information - chr21, chr22. Please read the legend for this data.
    • SNPs - Analysis of single-nucleotide polymorphisms in human chromosomes 21 and 22 ( Balasubramanian et al. Pharmacogenomics (2002) )
  • Mouse Pseudogene Data
    • Comprehensive Survey of Processed Pseudogenes in the Mouse Genome ( Zhang et al. TIG (2004) )
  • Worm Pseudogene Data
    • Pseudogenes in the C. elegans Genome ( Harrison et al. NAR (2001) )
    • Worm Pseudogene Browser
  • Fly Pseudogene Data
    • Pseudogenes in the Drosophila melanogaster Genome ( Harrison et al. NAR (2003) )
  • Yeast Pseudogene Data
    • Pseudogenes in the Yeast Genome ( Harrison et al. JMB (2002), Kumar et al. Nat Biotech (2002) )
  • Cress Pseudogene Data
  • Prokaryote Pseudogene Data
    • Prokaryote Pseudogenes ( Liu et al. Genome Biol (2004), Harrison et al. JMB (2003) )
• Links
  • Gerstein Laboratory
  • Ensembl
  • The Sanger Centre
  • The Riken Center Human Genome Research Group
  • Structural Classification of Proteins (SCOP)