7868 pseudogenes found by Zhaolei Zhang pipeline run on human build 28, the analysis can be accessed by clicking the hyperlink, the result published as shown in reference. This set later was mapped to current human build 35, 7066 pseudogene still can be mapped.
urn:lsid:pseudogene.org:9606.PFSet:2
13979 pseudogenes were identified by our pipeline run based on human build 34. Later this set was mapped to the current human build 35, 13809 pseudogenes remaining
urn:lsid:pseudogene.org:9606.PFSet:3
522 pseudogenes were identified on chromosome 22 by Deyou Zheng based on human build 34. Later this set was mapped to the current human build 35, 509 pseudogenes remaining. Original Analysis is accessible by clicking the link.
urn:lsid:pseudogene.org:9606.PFSet:4
201 transcribed pseudogenes were identified by Paul Harrison based on human build 34. Later this set was mapped to the current human build 35, all pseudogenes remaining.
urn:lsid:pseudogene.org:9606.PFSet:5
19629 pseudogenes were identified by D Torrents and Peer Bork based on human build 34. This set was mapped to the current human build 35 using liftOver, 18698 pseudogenes remaining. Original data analysis can be accessed by clicking the link.
urn:lsid:pseudogene.org:9606.PFSet:6
5791 processed pseudogenes were identified by Hoppsigen group based on human build 34. This set was mapped to the current human build 35 using liftOver, 4123 pseudogenes remaining. Original data analysis can be accessed by clicking the link.
urn:lsid:pseudogene.org:9606.PFSet:9
2885 duplicated pseudogenes identified from human build 35. This set is a subset of the whole build 35 run.
urn:lsid:pseudogene.org:9606.PFSet:10
Cytochrome C pseudogenes analyzed by Zhaolei Zhang based on Human build 28. The results were mapped to current human build 35. Original analysis is available by clicking the link. 49 pseudogenes in the original run. 31 of them can be mapped to pipeline run on human build 28, 29 of them can be mapped to current human build 35.
urn:lsid:pseudogene.org:9606.PFSet:11
Human Mitochondrial Ribosomal Proteins (MRP) Pseudogenes identified by Zhaolei Zhang in Aug. 2001. The original data is accessible by clicking the link. 119 pseudogenes were identified in the original set. 75 of them can be mapped to the current human build 35.
urn:lsid:pseudogene.org:9606.PFSet:12
GAPDH pseudogenes analyzed by gerstein group based on pipeline run of human build 35
urn:lsid:pseudogene.org:9606.PFSet:13
Ribosomal Protein pseudogenes analyzed by gerstein group based on pipeline run of human build 35
urn:lsid:pseudogene.org:9606.PFSet:14
167 Encode Pseudogenes identified by YALE, based on Ensembl human build 35
urn:lsid:pseudogene.org:9606.PFSet:15
This set includes all the pseudogenes identified by pipeline based on human build 35, different from the human pipeline on build 34 mapped to build35
urn:lsid:pseudogene.org:9606.PFSet:16
184 Encode Pseudogenes identified by Yale Pseudogene group, based on Ensembl human build 35
urn:lsid:pseudogene.org:9606.PFSet:18
46 Encode Pseudogenes identified by GIS Pseudogene group, based on Ensembl human build 35
urn:lsid:pseudogene.org:9606.PFSet:19
163 Encode Pseudogenes identified by UCSC retrogene group, based on Ensembl human build 35
urn:lsid:pseudogene.org:9606.PFSet:20
165 Encode Pseudogenes identified by HAVANA group, based on Ensembl human build 35
urn:lsid:pseudogene.org:9606.PFSet:21
198 consensus Encode Pseudogenes identified and agreed by 4 groups: Yale, HAVANA, UCSC, GIS, based on Ensembl human build 35
urn:lsid:pseudogene.org:9606.PFSet:22
187 Pseudogenes identified by JC(Sanger), based on Ensembl human build 35
urn:lsid:pseudogene.org:9606.PFSet:23
42 Pseudogenes identified by KO(Japan), based on Ensembl human build 35
urn:lsid:pseudogene.org:9606.PFSet:24
206 Pseudogenes identified by PH(Yale), based on Ensembl human build 35
urn:lsid:pseudogene.org:9606.PFSet:25
Pseudogenes identified by UCSC Yontao using SVM method, based on Ensembl human build 35
urn:lsid:pseudogene.org:9606.PFSet:26
Pseudogenes identified by UCSC Robert Baertsch, based on Ensembl human build 35
urn:lsid:pseudogene.org:9606.PFSet:27
Pseudogenes identified by VEGA group, based on Ensembl human build 35
urn:lsid:pseudogene.org:9606.PFSet:28
The union set of all sets from pseudogene.org based on human build 35, including manually annotated set and pipeline run set
urn:lsid:pseudogene.org:9606.PFSet:29
The union set of all sets from Pipeline, Bork, Hoppsigen, VEGA, UCSC Yontao, UCSC Robert based on human build 35
urn:lsid:pseudogene.org:9606.PFSet:30
201 consensus Encode Pseudogenes in Jan 6, 2006 freeze, based on Ensembl human build 35
urn:lsid:pseudogene.org:9606.PFSet:32
All flagged pseudogene fragments found using PPFINDER. Pseudogenes were detected as false positives in the prediction of functional protein coding genes.
urn:lsid:pseudogene.org:9606.PFSet:33
All pseudogenes identified by the Pseudogene.org pipeline, run on build 36
Accession Numbers follow the format: urn:lsid:pseudogene.org:9606.PFSet:X where X is the Set Number
UNION SET CONSTRUCTION TOOL (choose at least two sets and input order is important)
A layered set is computed by considering the specified prioritizing of the sets. They are constructed using the set union operator, but conflicts are resolved by choosing the pseudogene from the set of higher priority.
