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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1635 Check: 0 ..
Name: MRPS29P1 Len: 1635 Check: 9720 Weight: 1.49
Name: MRPS29P2 Len: 1635 Check: 1590 Weight: 0.75
Name: MRPS29 Len: 1635 Check: 3089 Weight: 0.75
Name: Consensus Len: 1635 Check: 6537 Weight: 0.00
//
1 130
MRPS29P1
MRPS29P2
MRPS29 GCCTTTTTTG CAGTCTCAGG ACGGGCGCTT TGGAGCCGGC CCCAGGCAGC GTGTGTCGGT CGCCTAGTCT GGAGAACTAG TCCTCGACTC ACGTGCAAGG ATGATGCTGA AAGGAATAAC AAGGCTTATC
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
131 260
MRPS29P1
MRPS29P2
MRPS29 TCTAGGATCC ATAAGTTGGA CCCTGGGCGT TTTTTACACA TGGGGACCCA GGCTCGCCAA AGCATTGCTG CTCACCTAGA TAACCAGGTT CCAGTTGAGA GTCCGAGAGC TATTTCCCGC ACCAATGAGA
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
261 390
MRPS29P1
MRPS29P2
MRPS29 ATGACCCGGC CAAGCATGGG GATCAGCACG AGGGTCAGCA CTACAACATC TCCCCCCAGG ATTTGGAGAC TGTATTTCCC CATGGCCTTC CTCCTCGCTT TGTGATGCAG GTGAAGACAT TCAGTGAAGC
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
391 520
MRPS29P1 T ATATTTTAGA TGGAGAGAAG GGAACCGGAA AAACACTCGG TCTTTGCCAT
MRPS29P2
MRPS29 TTGCCTGATG GTAAGGAAAC CAGCCCTAGA ACTTCTGCAT TACCTGAAAA ACACCAGTTT TGCTTATCCA GCTATACGAT ATCTTCTGTA TGGAGAGAAG GGAACAGGAA AAACCCTAAG TCTTTGCCAT
Consensus .......... .......... .......... .......... .......... .......... .......... .........t at.tt.t..a tggagagaag ggaac.ggaa aaac.ct..g tctttgccat
521 650
MRPS29P1 GTTATTCATT TCTGTGCAAA ACAGGACTGG CTGATACTAC GTATTCCAGA TGCTCATCTT TGGGTGAAAA ATTGCCGGGA TGTTCTGCAG TCCAACTACA ACAAACAGCG CTTTGATCAA CCTTTAGAGG
MRPS29P2
MRPS29 GTTATTCATT TCTGTGCAAA ACAGGACTGG CTGATACTAC ATATTCCAGA TGCTCATCTT TGGGTGAAAA ATTGTCGGGA TCTTCTGCAG TCCAGCTACA ACAAACAGCG CTTTGATCAA CCTTTAGAGG
Consensus gttattcatt tctgtgcaaa acaggactgg ctgatactac .tattccaga tgctcatctt tgggtgaaaa attg.cggga t.ttctgcag tcca.ctaca acaaacagcg ctttgatcaa cctttagagg
651 780
MRPS29P1 TTTCAACCTA GCTGAAGAAT TTCAAAACTA CAAATGAGCA CTTCCTG
MRPS29P2 CTG---- -TCTCTCCCA
MRPS29 CTTCAACCTG GCTGAAGAAT TTCAAAACTA CAAATGAGCG CTTCCTGAAC CAGATAAAAG TTCAAGAGAA GTATGTCTGG AATAAGAGAG AAAGCACTGA GAAAGGGAGT CCTCTGGGAG AAGTGGTTGA
Consensus .ttcaacct. gctgaagaat ttcaaaacta caaatgagc. cttcctg... .......... .......... .......... .......... .......... .......... ...ctg.... ...t.....a
781 910
MRPS29P1
MRPS29P2 ATAGGGCATA ACACGGGTGA GGAACACCAC AGATGCAGCT GGAATTGTGC TGAAAGAGCT AAAGAGGCAA AGTTCTTTGG GTGTTTTTCA CCTGCTGGTG GCCGTGGATG GAATCAATGC TCTTTGGGGA
MRPS29 ACAGGGCATA ACACGGGTGA GGAACGCCAC AGATGCAGTT GGAATTGTGC TGAAAGAGCT AAAGAGGCAA AGTTCTTTGG GTATGTTTCA CCTCCTAGTG GCCGTGGATG GAATCAATGC TCTTTGGGGA
Consensus a.agggcata acacgggtga ggaac.ccac agatgcag.t ggaattgtgc tgaaagagct aaagaggcaa agttctttgg gt.t.tttca cct.ct.gtg gccgtggatg gaatcaatgc tctttgggga
911 1040
MRPS29P1
MRPS29P2 AGGACTGCTC TGAAAAGAGA AGATAAATGC CCGATTGCCC CAGAGGAATT AGCACTTGTT CACAACCTGA GGAAAATGAT GAAAAATGAT TGGCATGGAG GTGCCATTGT GTTGACTTTG AACCAGACTG
MRPS29 AGAACCACTC TGAAAAGAGA AGATAAAAGC CCGATTGCCC CCGAGGAATT AGCACTTGTT CACAACTTGA GGAAAATGAT GAAAAATGAT TGGCATGGAG GCGCCATTGT GTCGGCTTTG AGCCAGACTG
Consensus ag.ac..ctc tgaaaagaga agataaa.gc ccgattgccc c.gaggaatt agcacttgtt cacaac.tga ggaaaatgat gaaaaatgat tggcatggag g.gccattgt gt.g.ctttg a.ccagactg
1041 1170
MRPS29P1
MRPS29P2 GGTCTCTCTT TAAGCCCCGG AAAGCCTATC TGCTCCAGGA GTTGCTGGTA AAGGAAGGAT TTGATGCCCT GGATCCCTTT ATTCCCATCC TGGTTTCCAA CTATAACCCA AAGGAATTTG AAAGTCGTAT
MRPS29 GGTCTCTCTT TAAGCCCCGG AAAGCCTATC TGCCCCAGGA GTTGCTGGGA AAGGAAGGAT TTGATGCCCT GGATCCCTTT ATTCCCATCC TGGTTTCCAA CTATAACCCA AAGGAATTTG AAAGTTGTAT
Consensus ggtctctctt taagccccgg aaagcctatc tgc.ccagga gttgctgg.a aaggaaggat ttgatgccct ggatcccttt attcccatcc tggtttccaa ctataaccca aaggaatttg aaagt.gtat
1171 1300
MRPS29P1
MRPS29P2 TCAGTATTGT TTGGAAAACA ATTGGCTTTA ACATGAGAAA GCTCATACAG AAGA---GAA AAAAGAGCTG CTGTTCTTAA ATAACGCAAA CCCCTCGCTG CTGGAGTGGT GCTGTGCCTA CCTCTAAGCC
MRPS29 TCAGTATTAT TTGGAAAACA ATTGGCTTCA ACATGAGAAA GCTCCTACAG AAGAAGGGAA AAAAGAGCTG CTGTTCCTAA GTAACGCGAA CCCCTCGCTG CTGGAGCGGC ACTGTGCCTA CCTCTAAGCC
Consensus tcagtatt.t ttggaaaaca attggctt.a acatgagaaa gctc.tacag aaga...gaa aaaagagctg ctgttc.taa .taacgc.aa cccctcgctg ctggag.gg. .ctgtgccta cctctaagcc
1301 1430
MRPS29P1
MRPS29P2 ACAA
MRPS29 AAGATCACAG CATGTGAGGA AGACAGTGGA CATCTGCTTT ATGCTGGACC CAGTAAGATG AGGAAGTCGG GCAGTACACA GGAAGAGGAG CCAGGCCCTT GTACCTATGG GATTGGACAG GACTGCAGTT
Consensus a..a...... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
1431 1560
MRPS29P1
MRPS29P2
MRPS29 GGCTCTGGAC CTGCATTAAA ATGGGTTTCA CTGTGAATGC GTGACAATAA GATATTCCCT TGTTCCTAAA ACTTTATATC AGTTTATTGG ATGTGGTTTT TCACATTTAA GATAATTATG GCTCTTTTCC
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
1561 1635
MRPS29P1
MRPS29P2
MRPS29 TAAAAAATAA AATATCTTTC TAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAA
Consensus .......... .......... .......... .......... .......... .......... .......... .....