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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 748 Check: 0 ..
Name: MRPS24_CDS Len: 748 Check: 4526 Weight: 1.49
Name: MRPS24_mRNA Len: 748 Check: 9577 Weight: 0.75
Name: MRPS24P1 Len: 748 Check: 2101 Weight: 0.75
Name: Consensus Len: 748 Check: 2438 Weight: 0.00
//
1 130
MRPS24_CDS ATG GCGGCCTCCG TGTGCAGCGG G--------- ---------- --TTGCTGGG GCCACGGGTG CTGTCCTGGA GCCGAGAGCT GCCTTGCGCT
MRPS24_mRN AAGATG GCGGCCTCCG TGTGCAGCGG G--------- ---------- --TTGCTGGG GCCACGGGTG CTGTCCTGGA GCCGAGAGCT GCCTTGCGCT
MRPS24P1 ACAGATCTGC TGTAAACATG GCGGGCGCTC GGCCAAGATG GCGGCCTCCG CGTGCGGCGG GCGGCGGGTG GCGGGTGGCG GGTGGCGGGG GCCCCGGGTG CCGTCCCGGG GCCGAGAGCT GCCTTGCGCG
Consensus .......... .......... .......... ....aagATG GCGGCCTCCG tGTGCaGCGG G......... .......... ..TtGCtGGG GCCaCGGGTG CtGTCCtGGa GCCGAGAGCT GCCTTGCGCt
131 260
MRPS24_CDS TGGCGCGCCC TGCACACCTC CCCGGTCTGC GCCAAGAACC GGGCGGCCCG AGTACGCGTA AGCAAGGGGG ACAAGCCGGT GACCTACGAG GAGGCACACG CGCCGCACTA CATCGCCCAC CGTAAAGGCT
MRPS24_mRN TGGCGCGCCC TGCACACCTC CCCGGTCTGC GCCAAGAACC GGGCGGCCCG AGTACGCGTA AGCAAGGGGG ACAAGCCGGT GACCTACGAG GAGGCACACG CGCCGCACTA CATCGCCCAC CGTAAAGGCT
MRPS24P1 GGGCGGGCCC CGCACACTTC CGCGTTCTGT AACAAGAACC GG-CGGCCCG AGTCCGCCGA GGCCAGGGGG ACAAGCCGGT GACCTATGAG GACGCACACG CGCCGCATTT CGTCGCCCGC CGTGAGGGCC
Consensus tGGCGcGCCC tGCACACcTC CcCGgTCTGc gcCAAGAACC GGgCGGCCCG AGTaCGCgtA aGCaAGGGGG ACAAGCCGGT GACCTAcGAG GAgGCACACG CGCCGCAcTa CaTCGCCCaC CGTaAaGGCt
261 390
MRPS24_CDS GGCTGTCGCT GCACACAGGT AACCTGGATG GAGAGGACCA TGCCGCAGAG CGAACGGTGG AGGATGTTTT CCTTCGCAAG TTCATGTGGG GTACCTTCCC AGGCTGCCTG GCTGACCAGC TGGTTTTAAA
MRPS24_mRN GGCTGTCGCT GCACACAGGT AACCTGGATG GAGAGGACCA TGCCGCAGAG CGAACGGTGG AGGATGTTTT CCTTCGCAAG TTCATGTGGG GTACCTTCCC AGGCTGCCTG GCTGACCAGC TGGTTTTAAA
MRPS24P1 AGAGGTCGCT -CACGCGGGG AACCCTGGTG GGGAGGACCA TGCGGCGGAG CGAACGGTGG AGGATGCTTT CCGTCGCAAG TTCATGTGGG GTGCCTTCCC GGGCTGCCTG GCTGACCCGC TGGTTTTACA
Consensus gGctGTCGCT gCACaCaGGt AACCtgGaTG GaGAGGACCA TGCcGCaGAG CGAACGGTGG AGGATGtTTT CCtTCGCAAG TTCATGTGGG GTaCCTTCCC aGGCTGCCTG GCTGACCaGC TGGTTTTAaA
391 520
MRPS24_CDS GCGCCGGGGT AACCAGTTGG AGATCTGTGC CGTGGTCCTG AGGCAGTTGT CTCCACACAA GTACTACTTC CTCGTGGGCT ACAGTGAAAC TTTGCTGTCC TACTTTTACA AATGTCCTGT GCGACTCCAC
MRPS24_mRN GCGCCGGGGT AACCAGTTGG AGATCTGTGC CGTGGTCCTG AGGCAGTTGT CTCCACACAA GTACTACTTC CTCGTGGGCT ACAGTGAAAC TTTGCTGTCC TACTTTTACA AATGTCCTGT GCGACTCCAC
MRPS24P1 GTGCTGGGCC AACCGGTTGG AGATCTGTGC CCTGGTCCCG AGGCACTTGC CTGCCCGCAA GTTCTACTTC CTCGTGGGCT ACAGTGAAAC TTTGCTGTCC CACTTTTACA AATGTCCTCT GCCACTCCAC
Consensus GcGCcGGGgt AACCaGTTGG AGATCTGTGC CgTGGTCCtG AGGCAgTTGt CTcCaCaCAA GTaCTACTTC CTCGTGGGCT ACAGTGAAAC TTTGCTGTCC tACTTTTACA AATGTCCTgT GCgACTCCAC
521 650
MRPS24_CDS CTCCAAACTG TGCCCTCAAA GGTTGTGTAT AAGTACCTCT AG
MRPS24_mRN CTCCAAACTG TGCCCTCAAA GGTTGTGTAT AAGTACCTCT AGAACAATCC CCTT-TTTTC CATCAAGCTG TAGCCTGCAG AGAATGGAAA CGTGGGAAAG GAATGGTATG T--GGGGGAA ATGCATCCCC
MRPS24P1 CTCCAAACTG TGCCCTCAAA GGTTGTGTAT AAGGACCTGT AGGACGATCC CTTTCTTTTG CATCAAGCTG TAGCCTGCAG AGAAGGGAAA CGTGGGAAAG AAGTGGTACG CCGGGGGGAA AGGCGTCCCT
Consensus CTCCAAACTG TGCCCTCAAA GGTTGTGTAT AAGtACCTcT AG.ac.atcc c.tt.tttt. catcaagctg tagcctgcag agaa.ggaaa cgtgggaaag .a.tggta.g ...gggggaa a.gc.tccc.
651 748
MRPS24_CDS
MRPS24_mRN TCAGAGGACT GAGGCATAGT CTCTCATCTG CTATTGAATA AAGACCTTCT ATCTTGAAAA AAAAAAAAAA AAAAA
MRPS24P1 CAAGAGGACT GAGGCATGGT CTCTCAGCTG CTATCCAATA AAGACCCTCT ATGTTGTCTT GAAAAAAAAA ATGCAAGGCA CCTCAGTTCT GAGAAATC
Consensus ..agaggact gaggcat.gt ctctca.ctg ctat..aata aagacc.tct at.ttg.... .aaaaaaaaa a...a..... .......... ........