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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1206 Check: 0 ..
Name: MRPS22_CDS Len: 1206 Check: 6166 Weight: 0.75
Name: MRPS22_mRNA Len: 1206 Check: 2308 Weight: 0.75
Name: MRPS22P1 Len: 1206 Check: 9721 Weight: 1.49
Name: Consensus Len: 1206 Check: 7815 Weight: 0.00
//
1 130
MRPS22_CDS AT GGCGCCCCTC GGAACAACTG TATTGCTGTG GAGCCTCTTG AGGAGTTCTC CGGGCGTGGA ACGGGTCTGT TTCCGGGCTC GAATCCAGCC CTGGCACGGT GGCCTGCTCC AACCGCTACC
MRPS22_mRN TGATAATCAT GGCGCCCCTC GGAACAACTG TATTGCTGTG GAGCCTCTTG AGGAGTTCTC CGGGCGTGGA ACGGGTCTGT TTCCGGGCTC GAATCCAGCC CTGGCACGGT GGCCTGCTCC AACCGCTACC
MRPS22P1 TTCT AACATAAAAA GGAAATGCTA TTTAAAATAG ----CAATTT AAAAGTTC-C TAGAAGTAAA CTA---CATT TACAAAATAC ACAG--AACC AAAACACTGA AGCAAAATTT AAAATATTAC
Consensus ......t.aT ggCgcccctc GGAAcaaCTg TaTtgctgtG gagcCtcTTg AggAGTTCtC cgGgcGTggA acgggtCtgT TtCcgggctC gaAtccAgCC ctggCACgGt gGCctgcTcc AAccgcTacC
131 260
MRPS22_CDS TTGCTCTTTC GAGATGGGGC TGCCACGCCG CCGGTTCAGC TCCGAGG--- --CCGCAGAA TCTGG--TAG CCCAGAGACC AA--GAAACC TACATTTATG GATGAGGAAG TTCAAAG-CA TACTCACGAA
MRPS22_mRN TTGCTCTTTC GAGATGGGGC TGCCACGCCG CCGGTTCAGC TCCGAGG--- --CCGCAGAA TCTGG--TAG CCCAGAGACC AA--GAAACC TACATTTATG GATGAGGAAG TTCAAAG-CA TACTCACGAA
MRPS22P1 TGACTCTGTC ACTGTGGAAA TACCAGACTG GCTCTTTAGG CGTGAAGAAG GTCAGCTGAC CCAGACCTAA CCCTGGGCCC TAAGGAAATT TACCAAGGTT ATCAGCTAAA CTCTGAGGCT GAATCAAGTA
Consensus TtgCTCTtTC gagaTGGggc TgCCAcgCcG cCggTTcAGc tccGAgG... ..CcGCaGAa tCtGg..TAg CCCaGaGaCC aA..GAAAcc TACatttaTg gatgaggAAg tTCaaAG.Ca tAcTCAcGaA
261 390
MRPS22_CDS AATGACAGG- CT-TGAACTT GCAGAAGACT TTTAAGCCAG CTATACAAGA ACTGAAGCCA CCAACCTATA AGCTAATGAC TCAGGCACAG TTGGAAG-AG GCTACAAGAC AGGCAGTTGA GGCAGCTAAA
MRPS22_mRN AATGACAGG- CT-TGAACTT GCAGAAGACT TTTAAGCCAG CTATACAAGA ACTGAAGCCA CCAACCTATA AGCTAATGAC TCAGGCACAG TTGGAAG-AG GCTACAAGAC AGGCAGTTGA GGCAGCTAAA
MRPS22P1 TCTCTGAGTT CTCTGAACAA GTTGAAAGCG TACTAATCAG GATGACTGGT T-TGAATTTA CAGTCGATTT TAAATCTAGC TGTTAAAGAA CTGAAACCAT GAATCCATAC --GCCAATGA CGCAGGCATA
Consensus aaTgacAGg. CT.TGAACtt GcaGAAgaCt TttaAgcCAG ctatACaaGa acTGAAgccA CcaaCctaTa agctaaTgaC TcaggcAcAg tTGgAAg.Ag GctaCaAgAC agGCagtTGA gGCAGctAaA
391 520
MRPS22_CDS GTACGATTAA AAATGCCACC AGTTCTGGAA GAGCGAGTAC CAATAAATGA TGTGTTAGCT GAAGATAAGA TTTTGGAAGG AACAGAAACA ACCAAATATG TGTTTACTGA TATATCATAT AGCATACCAC
MRPS22_mRN GTACGATTAA AAATGCCACC AGTTCTGGAA GAGCGAGTAC CAATAAATGA TGTGTTAGCT GAAGATAAGA TTTTGGAAGG AACAGAAACA ACCAAATATG TGTTTACTGA TATATCATAT AGCATACCAC
MRPS22P1 GT-----TGG AAAAGGCTAC AAAAC----A GTACGTAAGC CATAAAAGAA TAAAACGTCT AAACATGTGT ATGTATACAC ACCCCCAACA CACACACACA C----ACCGT AAAA----AA ACCCACACAC
Consensus GTacgatTaa AAAtGcCacC AgttCtggaA GagCGagtaC CAatAAAtgA TgtgttagCT gAAgATaaGa tTtTggAagg AaCagaAACA acCAaAtAtg tgtttACtGa tAtAtcatAt AgCatacCAC
521 650
MRPS22_CDS ACCGGGAGCG TTTTATTGTC GTCAGAGAAC CAAGTGGCAC ACTACGCAAA GCCTCTTGGG AAGAACGGGA CCGAATGATA CAAGTTTATT TCCCAAAAGA AGGTCGTAAA ATTTTGACAC CAATAATTTT
MRPS22_mRN ACCGGGAGCG TTTTATTGTC GTCAGAGAAC CAAGTGGCAC ACTACGCAAA GCCTCTTGGG AAGAACGGGA CCGAATGATA CAAGTTTATT TCCCAAAAGA AGGTCGTAAA ATTTTGACAC CAATAATTTT
MRPS22P1 ACTGGGGATA TCTTGCTGTG ATCAGAGAAC AAAGTGGCAT GCAAC-CAAG ACCTCATAGG AAGAGGAGAA AAGGATGATA CACATTTATT TCTAAATCGA GGATCCTAAA ACTTT-CCAC TATTGATATT
Consensus ACcGGGagcg TtTTatTGTc gTCAGAGAAC cAAGTGGCAc aCtACgCAAa gCCTCtTgGG AAGAacgGgA ccGaATGATA CAagTTTATT TCccAAaaGA aGgTCgTAAA AtTTTgaCAC cAaTaATtTT
651 780
MRPS22_CDS CAAGGAAGAA AATCTTAGGA CTATGTATAG CCAGGACAGG CATGTTGATG TCCTCAATCT CTGCTTTGCC CAGTTTGAGC CAGATTCCAC AGAGTATATC AAGGTTCATC ACAAGACCTA TGAAGATATA
MRPS22_mRN CAAGGAAGAA AATCTTAGGA CTATGTATAG CCAGGACAGG CATGTTGATG TCCTCAATCT CTGCTTTGCC CAGTTTGAGC CAGATTCCAC AGAGTATATC AAGGTTCATC ACAAGACCTA TGAAGATATA
MRPS22P1 CAAAGAGAAA AATTATAAGA CCGTGTACAG CCAG------ -------CTA TCCTCCA-CT CTGCATTGTT CTGTCTGAAC CAGATTCTGC CGAGTATATC AAGCTCTATT GGCAAATTTA TAAAGATACT
Consensus CAAgGAagAA AATctTAgGA CtaTGTAtAG CCAGgacagg catgttgaTg TCCTCaAtCT CTGCtTTGcc CaGTtTGAgC CAGATTCcaC aGAGTATATC AAGgTtcATc acaAgAccTA TgAAGATAta
781 910
MRPS22_CDS GATAAACGTG GAAAATATGA CCTTTTACGT TCAACAAGAT ACTTTGGTGG AATGGTG-TG GTATTTTGTA AATAATAAAA AGATTGATGG TTTGCTGATT GACCAGATTC AGAGAGATTT AATCGATGAT
MRPS22_mRN GATAAACGTG GAAAATATGA CCTTTTACGT TCAACAAGAT ACTTTGGTGG AATGGTG-TG GTATTTTGTA AATAATAAAA AGATTGATGG TTTGCTGATT GACCAGATTC AGAGAGATTT AATCGATGAT
MRPS22P1 ----AGCATG GTAAATAGGG CCTTT--CAT TGTAAAATAG TGAGAGGTGA CAGCGTGCTG GCAGTCCTCA CAGCCCTCGC TCACTCTCCG CACCTCCTCT GCCTGGGCTC CCA---CTTT GGCGGCACGT
Consensus gataAaCgTG GaAAATAtGa CCTTTtaCgT TcaAcAAgAt actttGGTGg aAtgGTG.TG GtAtTttgtA aAtaataaaa agAtTgatgG tttgctgatT GaCcaGatTC agAgagaTTT aatcGatgaT
911 1040
MRPS22_CDS GCAACCAACT TGGTCCAGCT GTATCAC--- --GTGCTCCA TCC------- -AGATGGC-C AGTCGGCTCA AGGGGCCA-- ---AGGATCA GGCTGCTGAG GGAATAAAT- TTAATCAAGG TCTTTGCA--
MRPS22_mRN GCAACCAACT TGGTCCAGCT GTATCAC--- --GTGCTCCA TCC------- -AGATGGC-C AGTCGGCTCA AGGGGCCA-- ---AGGATCA GGCTGCTGAG GGAATAAAT- TTAATCAAGG TCTTTGCA--
MRPS22P1 GAAGAGCCCT TCAGCCCGCC GCTGCACTGT GGGAGCCCCT TTCTGGGCCG GAGCCGGCTC CCTCAGCTTG CGGGGAGGTG TGGAGGGAGA GGCC-CGGCG GGAACCGGTG CTGCGCACGG TGCTTGCGGG
Consensus GcAaccaaCT TggtCCaGCt GtatCAC... ..GtGCtCCa TcC....... .AGatGGC.C agTCgGCTca aGGGGcca.. ...AGGatcA GGCtgCtGaG GGAAtaaaT. tTaatCAaGG TctTTGCa..
1041 1170
MRPS22_CDS --AAAACAGA AGCACAGAAG G-GAGCCTAT ATAGAACTAA CACTGCAGAC TTATCAAGAA GCACTCAGTC GCCATTCTGC AGCTTC--CT AA
MRPS22_mRN --AAAACAGA AGCACAGAAG G-GAGCCTAT ATAGAACTAA CACTGCAGAC TTATCAAGAA GCACTCAGTC GCCATTCTGC AGCTTC--CT AAAAATATTT TAAAAATACA TTTATTTTAC TAAAAAAAAA
MRPS22P1 CCAGTGCGAG TACCGAGTGG GTGTGGGTTC GGGGGCCCCA CACT-CGGAG CGGCCTTGGG GCCCGCCAGC -CCCGCCGGC CCCACCGGCC CCAGGCATTG AGGGGCTTAG CACCTAGGCC AGCAGCTGCT
Consensus ..AaaaCaga agCacAGaaG G.GaGccTat ataGaaCtaA CACTgCaGAc ttatCaaGaa GCaCtCagtC gCCattCtGC agCttC..Ct aaa...att. ......t... ....t....c ...a......
1171 1206
MRPS22_CDS
MRPS22_mRN AAAAAAAAAA AAAAAAAAAA AAAAAA
MRPS22P1 GTGCTCATTT TCTCAACGGG CCTTAGCTGC CTTCCT
Consensus ......a... ....aa.... ....a..... ......