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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1148 Check: 0 ..
Name: MRPS15_CDS Len: 1148 Check: 4514 Weight: 0.64
Name: MRPS15_mRNA Len: 1148 Check: 9595 Weight: 0.64
Name: MRPS15P1 Len: 1148 Check: 6044 Weight: 1.26
Name: MRPS15P2 Len: 1148 Check: 94 Weight: 1.46
Name: Consensus Len: 1148 Check: 7079 Weight: 0.00
//
1 130
MRPS15_CDS ATGCT GAGGGTCGCG TGGAGGACGC TGAGTTTGAT
MRPS15_mRN GCGG CCGCGGCGCG GGCCCC---- ------GCGG GGGTTAGAGG TCACCATGCT GAGGGTCGCG TGGAGGACGC TGAGTTTGAT
MRPS15P1 C CAGTCCCTA- --CAGTGAAG GGGCTGGAGG CTGTGGAGTA GGCCCCAGGG GAGTTGGTGG GGGTCAGAAG TCACCATGCT GAGGGCCACA TAGAGAGTGC CGAGTTCTAT
MRPS15P2 GAAGATATGT GGTGGCACTC ATGTAACTGA GTCCGTGCTG TGAAAGG-GA CAGCTGCCCT GGCCCC---- ------TTGG GGGTCAGAAG TCACCATGCC AAGGGCTGTG TGAAAGGTGC TAAGTT----
Consensus .......... .........c ..gt..ct.. ..c.gtg..g .g...gg.g. c.gc.gc.c. ggcccc.... .......tgg gggtcagaag tcaccATGCt gAGGGccgcg TggAgggtGC tgAGTT..at
131 260
MRPS15_CDS TCGGACCCGG GCAGTTACCC AGGTCCTAGT ACCCGGGCTG CCGGGCGGTG GGAGCGCCAA GTTTCCTTTC AACCAGTGGG GCCTGCAGCC TCGAAGTCTC CTCCTCCAGG CCGCGCGCGG ATATGTCGTC
MRPS15_mRN TCGGACCCGG GCAGTTACCC AGGTCCTAGT ACCCGGGCTG CCGGGCGGTG GGAGCGCCAA GTTTCCTTTC AACCAGTGGG GCCTGCAGCC TCGAAGTCTC CTCCTCCAGG CCGCGCGCGG ATATGTCGTC
MRPS15P1 T-GGACCCAG GCAGTGACCC AGACCCCAGT CCTTGGGCTG CTGGGCTGAG GGAATGCCAG GCTTCCTTCC AACTGAAGGG GCCTGCAG-- ------TCTC CTCCTCCAGG CTGCA-GCAG ATACACCATC
MRPS15P2 ------CCA- -CTGAGACCC AAGCTCCAGT TTTTGAGAAG CCAAAAGGAG GGAGCACCAG GCTTCCTTCC AACCAGTGGT GCTGGTATCC TCCAAGTTTC TTCCTCCAGG CCACCTGTGG ATATGCCATC
Consensus t.ggacCCag gCaGtgACCC AggccCcAGT .cttGgGctG CcgggcgGaG GGAgcgCCAg GcTTCCTTcC AACcagtGGg GCctGcAgcc tc.aagTcTC cTCCTCCAGG CcgC..GcgG ATAtgcCaTC
261 390
MRPS15_CDS CGGAAACCAG CCCAGTCTAG GCTGGATGAT GACCCACCTC CTTCTACGCT GCTCAAAGAC TACCAGAATG TCCCTGGAAT TGAGAAGGTT GATGATGTCG TGAAAAGACT CTTGTCTTTG GAAATGGCCA
MRPS15_mRN CGGAAACCAG CCCAGTCTAG GCTGGATGAT GACCCACCTC CTTCTACGCT GCTCAAAGAC TACCAGAATG TCCCTGGAAT TGAGAAGGTT GATGATGTCG TGAAAAGACT CTTGTCTTTG GAAATGGCCA
MRPS15P1 CAGAAACCAG TCTGGCCTAG ACAGGACCAT GACCTTCCCC TTTCCATGCT GCTCAAAGAC CACCAGACCA TCCCTGGAAT TGAGAAGGGC AATGATACAG TGAAAAGATC CTTGTCTTTG GAAATGACCA
MRPS15P2 CAGAAACCAG TCCAGCCCAG CCAAGATGAT GACCTGTCCC CTTATACGCT GCTCAAAGAC TACCAGAACT TTCCCAGGAT TGAGAGGGTT GATGACATTG GGAAAAGACA CTTGTCTTTG GAAATGGCCA
Consensus CaGAAACCAG tCcaGcCtAG .CagGAtgAT GACCt.cCcC cTTctAcGCT GCTCAAAGAC tACCAGAac. TcCCtgGaAT TGAGAaGGtt gATGAtat.G tGAAAAGAc. CTTGTCTTTG GAAATGgCCA
391 520
MRPS15_CDS ACAAGAAGGA GATGCTAAAA ATCAAGCAAG AACAGTTTAT GAAGAAGATT GTTGCAAACC CAGAGGACAC CAGATCCCTG GAGGCTCGAA TTATTGCCTT GTCTGTCAAG ATCC------ ----------
MRPS15_mRN ACAAGAAGGA GATGCTAAAA ATCAAGCAAG AACAGTTTAT GAAGAAGATT GTTGCAAACC CAGAGGACAC CAGATCCCTG GAGGCTCGAA TTATTGCCTT GTCTGTCAAG ATCC------ ----------
MRPS15P1 ACCAAAAGGA GAAGCTAAAT ATCAAGTAAG AACATCTGAT GAACAAAGTC GTGGCAAACC CTAAGGACAC CAGCTTCCTG GAGGCTCGAA TTATTCCCTT GAC---CAAA GCCC------ ----------
MRPS15P2 ACCA---GGA GAAGCCAAAA ATTAAGCCAG AATAGTTGAT AAAAAAGGAC ATGGCAAGCC CTGAGGACAC CAGCTCCACA GAGGCTGGAA TTATCGACTT GAACATCAAG GCCCACAGTT TTGTTTTGTT
Consensus ACcA.aaGGA GAaGCtAAAa ATcAAGcaAG AAcAgtTgAT gAA.AAggtc gTgGCAAaCC CtgAGGACAC CAGcTcCctg GAGGCTcGAA TTATtgcCTT Gac..tCAAg gcCC...... ..........
521 650
MRPS15_CDS ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ----------
MRPS15_mRN ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ----------
MRPS15P1 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ----------
MRPS15P2 TTGTTTTGTT TTTTTGAAAT GGAGTTTTGC TCTGCCACTC AGGCTGGAGT ATAGTGGCAT GTTCTCGGCT CACTGCAACC CCCGCCTCCT GGGTTCAAGC GATTCTCCCA CCTCCTGGGT TCAAGCGATC
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
651 780
MRPS15_CDS ---------- ---------- ---------- ---------- ---------- ---------- -----GCAGT TATGAAGAAC ACTTGGAGAA ACATCGAAAG GACAAAGCCC ACAAACGCTA TCTGCTAATG
MRPS15_mRN ---------- ---------- ---------- ---------- ---------- ---------- -----GCAGT TATGAAGAAC ACTTGGAGAA ACATCGAAAG GACAAAGCCC ACAAACGCTA TCTGCTAATG
MRPS15P1 ---------- ---------- ---------- ---------- ---------- ---------- -----ACAAT TATGAAGAAC ACA-GCAGAA ACACTGAAAT AACAAAACCC ACAAATACTA T-TGGTGATG
MRPS15P2 CTCCCACCTC AGCCTCCCAA AATGCTGGGA TTACAGGCAT GAGCCACTGC ACCTGGCCAA GATCTGCAGT TATGAAAAAC ACATGCTGAC ATATTGAAAG GACAAAGCCC ACAAATGCTA TCTGCTGATA
Consensus .......... .......... .......... .......... .......... .......... .....gCAgT TATGAAgAAC ACatGcaGAa AcAttGAAAg gACAAAgCCC ACAAAtgCTA TcTGcTgATg
781 910
MRPS15_CDS AGCATTGACC AGAGGAAAAA GATGCTCAAA AACCTCCGTA ACACCAACTA TGATGTCTTT GAGAAGATAT GCTGGGGGCT GGGAATTGAG TACACCTTCC CCCCTCTGTA TTACCGAAGA GCCCACCG-C
MRPS15_mRN AGCATTGACC AGAGGAAAAA GATGCTCAAA AACCTCCGTA ACACCAACTA TGATGTCTTT GAGAAGATAT GCTGGGGGCT GGGAATTGAG TACACCTTCC CCCCTCTGTA TTACCGAAGA GCCCACCG-C
MRPS15P1 GGCACTGTCC AGAGGAAAAA GATGCTCAAA AACCTTCGTT AGACCAA-TA TGATGTCTCT GAGAAGACAC ACTGGGGACT GAG------- ---------- CACATCTTTT TGATGGAGCA GCCCATTG-C
MRPS15P2 AGCATCAACC AGAGGAAAAA GATGCTCAAA AACCTCCACA AAACCTATTA TGACAACTCT GGGAAGACAT GCAGGGAACT GGGGACTGAA GACACCTTT- CCCCTCTGAA TTACCAAACA GCCCACTGAC
Consensus aGCAttgaCC AGAGGAAAAA GATGCTCAAA AACCTcCgta A.ACCaA.TA TGAtgtCTcT GaGAAGAcAt gCtGGGgaCT GgG.a.tga. .acacctt.. CcCcTCTgta TtAccgAacA GCCCActG.C
911 1040
MRPS15_CDS CGATTC--GT GACCAAGAAG GCTCTGTGCA TTCGGGTT-T TCCAGGAGAC TCAAAAGCTG AAGAAGCGAA GAAGAGCCTT AAAGGCTGCA GCAGCAGCC- CAAAAACA-- ---AGCAAAG --------CG
MRPS15_mRN CGATTC--GT GACCAAGAAG GCTCTGTGCA TTCGGGTT-T TCCAGGAGAC TCAAAAGCTG AAGAAGCGAA GAAGAGCCTT AAAGGCTGCA GCAGCAGCC- CAAAAACA-- ---AGCAAAG --------CG
MRPS15P1 CAAGTC--CT GACTGAGAAG ACT--GTGCG TTCTGGATGT TCCAAGAGAC TCAAAAGCTG AAGAAGCAAA AACAGCCTTT AAAAGTTGCA GCAGCAGCAG CAGCAGCAGC GGCAGCTCAA AACATGACCA
MRPS15P2 CGTCGCTTCT GACTAAGAAG GCTCTGTGAA TTCAGGTT-T TCCAGAATGT GCAAAAGCTG AAGAAACAAA AAAGGTCTT- ---AGCTGCA GCAGCATCAG CAGTCAGAAA A-CAAAACAA AACAAAAACA
Consensus Cga.tC..cT GACtaAGAAG gCTctGTGca TTC.GGtT.T TCCAggAgac tCAAAAGCTG AAGAAgCaAA aAagg.CtTt aaaaGcTGCA GCAGCAgCag CAg.aacA.. ..cAgcacAa aaca..a.Ca
1041 1148
MRPS15_CDS GAGGAACCCA GACAGCCCTG CCAAAGCCAT ACCAAAGACA CTCAAAGACA GCCAA-TAA
MRPS15_mRN GAGGAACCCA GACAGCCCTG CCAAAGCCAT ACCAAAGACA CTCAAAGACA GCCAA-TAAA TTCTGTTCAA TCATTAAAAA AAA
MRPS15P1 GAGGAATCCA GAGAGCCCTG CCAAAGCCTG ACCAGAAGTA CTCAAAGAAA ATAAACTGTT AAATATTTTT TTGAAAAAGA AAACTGAATA GACATTCTCT AAACAAGA
MRPS15P2 ATAAATTATA TAAAAAAT-- --AAAGCAAA ACACAACAAA AAACAAGTAG GTAA--TAAG TGAAGATACA GGCTTGAAGC AATATTATCA ACCAAGTTGA CTACTTGG
Consensus gaggAatccA gA.Agccctg ccAAAGCca. ACcaaA.a.A ctcaAAGaaa gtaAa.Taa. t.a.g.t..a ...tt.aag. aa..t.a..a ..ca...t.. ..ac..g.