Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1140 Check: 0 ..
Name: MRPL50_CDS Len: 1140 Check: 6281 Weight: 1.57
Name: MRPL50_mRNA Len: 1140 Check: 9605 Weight: 0.74
Name: MRPL50P4 Len: 1140 Check: 7333 Weight: 0.74
Name: MRPL50P3 Len: 1140 Check: 2282 Weight: 0.87
Name: MRPL50P1 Len: 1140 Check: 7166 Weight: 1.00
Name: MRPL50P2 Len: 1140 Check: 7013 Weight: 1.08
Name: Consensus Len: 1140 Check: 4016 Weight: 0.00
//
1 130
MRPL50_CDS ATGGCGGCGC GATCTGTGTC GGGCATTACC AGAAGAGTCT TCATGTGGAC AGTCTCAGG- -GACACCATG
MRPL50_mRN AGGC --CCGTGGAT CTCATCGAAG ATGGCGGCGC GATCTGTGTC GGGCATTACC AGAAGAGTCT TCATGTGGAC AGTCTCAGG- -GACACCATG
MRPL50P4 CACAGTG AGATACCCCT ACACTCTC-A TTAGAATGGC TGAAATGGAT CTCATTGAAG ATGGTGGTGC AATCTGTGTC CAGCATTATC AGAAGAGTCT TTATGTGGAC AGTCTCAGG- -GGCACC-TG
MRPL50P3 CCAAATT TCTCTTTGTT AAGATCAC-T GTAGCTCAGC C-CCATGGAT CTCATTGAAG ATGGCGGGGC GATCTGTGTC TGGCATTACC AGAAGAGTCT TCATGTGGAC AGTCTCAGG- -GACAACACG
MRPL50P1 TGCATATTC AAAGGATATG GGTCCCACCT AAAGCTATGC TTAGGCAGAT AT--TTGGTC TTAAATGATT AATGAAAGAA TAGC-TGAAA AGAAATGA-T TTAGGAGTTC A-TCTCAAGA AGTCAAAATA
MRPL50P2 AGACCCCATC TCAAAAAAAG AAAAAGA--A AACGAGAGGC --CCGTGGAT CTCATCGAAG ATGGCAGCGC AATCTGTGTC CGGCATTACC AGAAAAGTCT TCATGTGGAC AGTCTCAGG- -GGCACCACA
Consensus ...c....t. .......... .......... ...g....gc .....tggat ctcat.gaag aTggcgGcgc gATctgtGtc .gGCaTtAcc AGAAgaGtcT TcAtGtGgaC AgTCTCAgG. .GaCAccatg
131 260
MRPL50_CDS TAGAGAATTT TGGTCTCGAT TCAGAAAAGA GAAAGAGCCA GTGGTTGTTG AGACAGTAGA AGAG---AAA AAGGAACCTA TCC-TAGTGT GTCC-ACCTT TACGAAGCCG AGCATACACA CCACCTGAAG
MRPL50_mRN TAGAGAATTT TGGTCTCGAT TCAGAAAAGA GAAAGAGCCA GTGGTTGTTG AGACAGTAGA AGAG---AAA AAGGAACCTA TCC-TAGTGT GTCC-ACCTT TACGAAGCCG AGCATACACA CCACCTGAAG
MRPL50P4 AAGAGAATTT TGGTCTCAAT CCAGAAAAGA GAAAGAGCCA GTGGTTGCTG AGACAGTAAA AGAGGTGAAA AAAGAACCTA TCC-CAGTGC GTCC-ACCCT TACGAAGCCA AACATATACA CCACCTGAAG
MRPL50P3 TAGAGAATTT GGGTCTCGAT CCAGAAAAGA GAAAGTGCCA GTGGTTGCTG AGACAG---A AGAGGTGAAA AAGGAACCTA TTG-CAGTGT GTCC-ACCCT CATGAAGCTG AGGATACTCA CCACCTGGAG
MRPL50P1 ATAGCAATTT TGGTCTCGAT CGAGGAAAGA TAAAGAGCCA GTGGTAGCTG AGGTGGCAGA AGAGGTGAAA AAGGAA--TA CTC-TGGCAT GCCCTACCCT TACAAAGCCA AACATACTTA TCACCTGAAG
MRPL50P2 TACAGAATTT TGGTCTCGAT CCAGAAAATA GAAAGAGCCA GTGGTTGCTG AGACAGTACA AGAGGTGAAA AAGGAATCTA TCCTCAGTGT GTCT-ACCCT CACAAAGCCG AGCATACACA CAACCTGAAG
Consensus tagagAATTT tGGTCTCgAT ccAGaAAAgA gAAAGaGCCA GTGGTtGcTG AGacaGtagA AGAGgtgAAA AAgGAAccTA tcc.taGtgt GtCc.ACCcT tAcgAAGCcg AgcATAcacA ccACCTGaAG
261 390
MRPL50_CDS ATCTCCAGAG --TCGTTTGG AATCTT-ACG TTAAAGAAGT TTTTGGTTCA TCTCTTCCTA GTAATTGGCA AGACATCTCC CTGGAAGATA GTCGTCTAAA GTTCAATCTT CTGGCTCATT TAGCTGATGA
MRPL50_mRN ATCTCCAGAG --TCGTTTGG AATCTT-ACG TTAAAGAAGT TTTTGGTTCA TCTCTTCCTA GTAATTGGCA AGACATCTCC CTGGAAGATA GTCGTCTAAA GTTCAATCTT CTGGCTCATT TAGCTGATGA
MRPL50P4 GTCTCCAGAG --TCGTTTGG AATCTTTATG TTAAATAAGT TTTTGGCTCA TGTTTTCCTA GTAATTGGCA AGACATTTCC CTGGAAGATG GTTGTCTACA GTTCAATCTT TTGGCACATT TAGCTTATGA
MRPL50P3 ATCTCCAGAG --TCATTTGG AATCTT-ATG TTAAAGAAGC TTTTGGTTCA TCTCTTCCTG GTAATTGGCA CGACATCTCC CAGGAAGATG GTCATCTAAA GTTCAATCTC TTGGCACATT TAGCTGATGG
MRPL50P1 ATCTCCAGAG AGTCGTTTTG AACCT----G GTAAAGAGG- TTTTGGTTCA TTTCTTCCCG GTAATTGAGA GGACAGATCC CTGGAAGATG GTAATCTGAA GTTCAGTCTC ---------- --------GG
MRPL50P2 ATCTCCAGAG --TTGTTTGG AATCTT-ATG TTAAAGAAGT TTTTGGTTCA TCTCTTTCTA GTAATTGGCA AGACATCTCC CTGGAAGATG GTCATCTACG GTTCAATCTC TTGGCACATT TAGCTGATGG
Consensus aTCTCCAGAG ..TcgTTTgG AAtCTt.a.G tTAAAgAaGt TTTTGGtTCA TcTcTTcCta GTAATTGgcA aGACAtcTCC CtGGAAGATg GTcgTCTaaa GTTCAaTCTt .tggc.catt tagctgatGa
391 520
MRPL50_CDS CTTGGGTCAT GTAGTCCCTA ACTCCAGACT CCACCAGATG TGCAGGGTTA GAGATGTTCT TGATTT-CTA TAATGTCCCT ATTCAAGATA GATCTAAATT TGATGAACTC AGTGCCAGTA ATCTGCCCCC
MRPL50_mRN CTTGGGTCAT GTAGTCCCTA ACTCCAGACT CCACCAGATG TGCAGGGTTA GAGATGTTCT TGATTT-CTA TAATGTCCCT ATTCAAGATA GATCTAAATT TGATGAACTC AGTGCCAGTA ATCTGCCCCC
MRPL50P4 CTTGGGTCAT GTAGTCCCTA ATTCCAGACT CCACCAGTTG TGCAGGATTA GAGATGTTCT TGGTTT-CTA TAATGTCCCT ATTCAAGATA GATCTAAATT TTATGAACTC AATGCCAGTA ATCTGCCCCC
MRPL50P3 CCTGGGTCAC GTAGTCTCTA ACTCCAGACT CCACCAGATG TGCGGGGTTA GAGATGTTCT TGATTT-CTA TAATGTCCCT ATTCAAGACA GACCTAAATT TGATGAACTC GGTGCCAGTA ATCTGCCCCC
MRPL50P1 CATGGCCATT GTAGTCCCTA ACTCCAGGCT TCACGAGCTG TGCAGCGTTA GAGATGTTCT TGATTT-CTA TAAAGTCGCT GTTCACAACA GATGTAAATT TGATGAACTT GATGCCAATA ATCTGCCTCT
MRPL50P2 CTTGGGTCAT GTAGTCCCTA ACTCCAGACT CCACCAGATA TGCAGGGTTA GAGATGTTCT TGATTTTCTA TAATGTCCCT ATTCAAGATA GATCTAAATT TGATGAACTC AGTGCCAGTA ATCTGCCCCC
Consensus CtTGGgtcat GTAGTCcCTA AcTCCAGaCT cCACcAGaTg TGCaGggTTA GAGATGTTCT TGaTTT.CTA TAAtGTCcCT aTTCAagAtA GAtcTAAATT TgATGAACTc agTGCCAgTA ATCTGCCcCc
521 650
MRPL50_CDS CAATTTGAAA ATCACTTGGA GTTACTAA
MRPL50_mRN CAATTTGAAA ATCACTTGGA GTTACTAAGC AATTCGGAAG AGAAACACAT TGAAATCACT GTCTTTCCCT GAGCAAGGGG GCTGCTCATT AGATCTTTTG ATACTTTACC ATGTGAAATA CTACCAGAAC
MRPL50P4 CAATTTGAAA ATCACTTGGA GTTACTAAGC AATTCAGAAG AGAAATACAT TGAAATCATT TTATCCCCCT GAGCAAGGGG GCTGCTTTTT AGGCTTTTTG ATACTTTGCC ATGTGAAATA TTATCAGAAC
MRPL50P3 TAGTTTGAAA ATCACTTGGA G--------C AATTCGGAAG AGAAACACAT TGAAATCATT TT-TTTCCCT GAGCAAGGGG CCTGCTTATT AGACCTTTTG AAACTTCACC ATGTGAAATA CTACCAGAAC
MRPL50P1 CAATTTGAAA ACCACCTGAA GTTACTGAGC AATTCAGAAG AGAAATACTT TAAAATAACT TT-TATCCCT GAGCAAGGGA GATGCTTATT AGACTTTTTG ATACTTTACC ATGTAAAATG CTATCAGAAC
MRPL50P2 CAATTTGAAA ATCACTTGGA GTTACTAAGC AATTTG---- ----ATCCAT CAGACTGCGN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
Consensus cAaTTTGAAA AtCACtTGgA Gttactaagc aattc.gaag agaaa.acat t.aaat.a.t .t.t..ccct gagcaaggg. ..tgct..tt ag...ttttg a.actt..cc atgt.aaat. .ta.cagaac
651 780
MRPL50_CDS
MRPL50_mRN TGTTCTCTAA ACCCACTTTT TCTGTAGAGG AATGTATCAT CTTTTTTTTT ---CTCATAT TACAAATGGA CAAATAA--- -CGGACTTTC TATTTTCATA TTTGCTGAAA CCATTTTTT- ---AAATGAA
MRPL50P4 TGTTCTCTAA ACCCACTTTT TCTATAGAGG AATGTATCAT CTCTTTTTTT ---CTCATAT TATGAATGGA TAAAGAATAA TAGGATTTTC TATTTTCATA TTTGCTGAAA TCATTTTTT- ---AAATGAA
MRPL50P3 TGTTCTCTAA ACACACTTGT TCTATAGAGA AATGTATCAT CTCTTTTTTT TTTCTCATAT TATGAATGGG CAAATAAC-- -AGGACTTTC TATTTTCGTA TTTGCTGACA CCATTTTTT- ---TTTTTTG
MRPL50P1 TGCCCA-TAA ACCTACTTTT TCTGTAGAAT TGTGCATCAT CCTTTTTT-- ---CTCATAT CGTGAATCAA TAGAGAATAA CAGAATTTTC TGTGGTCATG TTTGCCAAAA CCATTTTTTT AAAAAATGGA
MRPL50P2 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNG ACCCTGTC-T CAAAAAAACA AAACCAAAAA CAAGCAAACA AAAAAACAGC TGGGCATGGT GGCATGCATA TGTAGTCCCA GCTATTCTA- -------GAG
Consensus tg..c..taa ac..actt.t tct.taga.. a.tgtatcat c..ttttt.. ...ctcatat .a.gaat..a .aaa.aa... ..gga.tttc t.t.ttcata tttgct.a.a .catttttt. ......tg..
781 910
MRPL50_CDS
MRPL50_mRN ATTAGGTCAT TA----TTTA TGAAAAGTTT -----TGAGA GGGCACTGTC A---ACTTGG GTTTAAGACA GGAGGACATT GCAAGT--TC ACACCTTTCA TAAGCATAAA GTAGT----- ----TGCAAG
MRPL50P4 ATTAGGTCAT TAATAATTTA TGAAAAACTT -----TGAGA GGACACTGTC ATTAACTTGG GTGTGAGACA GGAGGATATT ACAAGC--TC AGACCCTTCA TAGGCATAAA GTAGTAGTAG TAGTTGCAAG
MRPL50P3 AGACAGAGTT TCGCTCTGCC ACCCAGGCT- -------GGA GTGCAGTGGC GCGATCTCGA CTCACTGCAA GCTCCGCCTC CTGGGT--TC ACGCCATTCT CCTGCCTCA- GCCTCCCGAG TAGCTGGGAC
MRPL50P1 ACCAAGTCAT TAATAACTTA GGAAAATCTT CTTCTTGAGA GGATACTGTA ATTAACTTGG ATTTAAGAAA CGAGGACACT GCAGGT--TC AGACCCTTCA TACGCATAAA GTAGT----- -GGTTGCAAG
MRPL50P2 GCTGAGGTGA GATCGCTGGA GCCCAGGA-- -------GGT GGAGGCTACA GTAAGCTGTG ATCATGCCAA TGCACTCCAG CTTGGTCAAC AAAGCAAGAC TGTGCCTCAA AAAAAAA--- -AAAGAAAAG
Consensus a....g...t ta....t..a ....a...t. ........ga gg..actg.. ...a.ct.gg .t....g..a .g....c... ....gt..tc a.acc.ttc. t..gc.t.aa g.a....... ....tg.aag
911 1040
MRPL50_CDS
MRPL50_mRN AAAGTATTTT CA--TCCTGT TAGGATTC-- ATATCTAAGA TAGA---GTT ATGCATTGCA CATACACAAA TAAACTTTTA TTAGATAGAT ---A--CCTA TAAAAGAAAC ATAAAAGTAT GT--TGTGTA
MRPL50P4 AAAATATGTT CA--TCCTTT TAGGGCTC-- ATATCTAAGA TAGG-TTATT ATATATTACA AATATACAAA TAAACTTGTA TTACATAGAT ---A--CCTA TGAAAGAAAC ATAAAACGAT GT--TGTATA
MRPL50P3 TACAGGTGCC CGCCACCACG CCCGGCTA-- ATTTTTTGTA TT-T-TTTTT TTTTTCAGTA GAGACAGGGT TTCACCGTGT TAGCCAGGAT ---GGTCTCA ATCTCCTGAC CTCATGATCT GT-CTGCCTC
MRPL50P1 AAAATGGTTT AA--TCCTGT TAAGACTCTG AAATCTAAGA TAAAATTATT ATTTATAGCA CACATAAAAA TAAGGAAAAT TATATTAGGT TAGATATTTA TAAAAGAAAC ATAAAAGTCT GTGTTGTACA
MRPL50P2 AAAAGAAAGA AAGAAAAGAA AAAGAAAAAA AGTTATGTAC GTATGGTTTT TTTTTTTTTT TGGATAGAGT TTCACTCTTC TTGCCCAGGC TGGAGTGCAA TGGTGCAATC TTGGCTCACC AC---AACCT
Consensus aaaa...... .a...cc... .a.g..t... a..t.t...a t.....t.tt .t.t.t...a .a.a.a.a.. t..ac..... t.....ag.t ...a.....a t.....aaac .t.a.....t gt..tg....
1041 1140
MRPL50_CDS
MRPL50_mRN TTACTGACA- -GTTCTAG-- ATTAATTTCT TTTAGAATTA AAGCA--GAT TTGTTAAAGT GAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
MRPL50P4 TTACTGACC- -ATTCTAG-- ATTAATTTCT TTTGAAATTA AAG-----GT TGGTTAAAGT GTTAAAAAAT GGCTGAAATG AAAGCAACTG ACTATAC
MRPL50P3 AGCCTCCCAA AGTGCTGG-- GATTATAGGT ATGAGCCGTT GCGCCCGGAC TTTTTGAAAC CATTTTAAAA TGAAATTAGA TCATTAATAA TTTATGAAAA
MRPL50P1 TTACTGTCC- -AATCTGG-- ATTAATTTCT TTTGGAATTA AAGTA--GAT TTATTAAGGT GAAAAAAGTG AACATCCTGA AAGCC
MRPL50P2 TCCCCTACTG GGTTCAAGCG ATTCTCCTGT TTCAGCCTCC CCAGTAGCTG GGATTAAAGG CATGTGCCAC CACGCCCGGC TAATTTTGTA TTTTT
Consensus t..ct..c.. ..ttct.g.. att.at.t.t tt..g..tt. ..g....... t..ttaaag. .a....a.a. .......... .aa....... ..........