Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 2167 Check: 0 ..
Name: MRPL49_CDS Len: 2167 Check: 6173 Weight: 1.92
Name: MRPL49_mRNA Len: 2167 Check: 3041 Weight: 0.59
Name: MRPL49P1 Len: 2167 Check: 468 Weight: 0.59
Name: MRPL49P2 Len: 2167 Check: 3868 Weight: 0.90
Name: Consensus Len: 2167 Check: 5375 Weight: 0.00
//
1 130
MRPL49_CDS A TGGCAGCTAC CATGTTCCGG GCTACGCTGC GGGGATGGAG AACCGGTGTC CAGCGGGGCT GCGGGCTACG GCTGTTGAGC
MRPL49_mRN GTAG CAGGTAAAGA TGGCAGCTAC CATGTTCCGG GCTACGCTGC GGGGATGGAG AACCGGTGTC CAGCGGGGCT GCGGGCTACG GCTGTTGAGC
MRPL49P1 AACATCTA AATTGATAAA TAAATAGACA GCGGAATAAG CTAGGTAAGG -GGCAACTAC CATGTTCCGG GACATGCTGC AGGGCTGGAG AACCAACATC CACCAGGGCT GTGGGCTATG ACTACTGAGC
MRPL49P2 ATAGCTTTGG CCTCAGTGAA AAATGTCTTA GAGCCCAAGG CCAGAACAG- -GGCAACATC CACGTTCTGG GCTGCACTGC TGGACTGGAG AGCCAGTATC CAGTCTGGCT ATTCACCAT- ATAGCTGAGA
Consensus .......... .......... .......... .........g c..g...aga tGGCAgCtaC CAtGTTCcGG GctacgCTGC gGGgaTGGAG AaCCggtgTC CAgcggGGCT gcgggCtAcg gctgtTGAGc
131 260
MRPL49_CDS CAGACCCAGG GCCCTCCAGA TTACCCCAGG TTTGTGGAGT CTGTGGATGA ATATCAGTTT GTGGAGCGCC TGTTACCGGC TACCAGGATC CCAGATCCCC CAAAGCATGA ACATTATCCT ACCCCTAGTG
MRPL49_mRN CAGACCCAGG GCCCTCCAGA TTACCCCAGG TTTGTGGAGT CTGTGGATGA ATATCAGTTT GTGGAGCGCC TGTTACCGGC TACCAGGATC CCAGATCCCC CAAAGCATGA ACATTATCCT ACCCCTAGTG
MRPL49P1 CAGACCCTGG CAGCTCTGGA TTATCCGAGC TTTGTGAAGC CTGTGGATGA ACA--CGTTT GCAGAGTGAC TGTTACTCTT CACTAGGATC CCAAAGTCCC CAAGGCATGA ACATTATCCC ACCCCAA-TG
MRPL49P2 TAGGTTCAGG GGTCTCCAGA TTACCCCAGG TTTGTAGAGT ATATGTATGA ATACCAATTT GTGGAGTGTC TATTATTCCC TACCAGCGTC TTAATGCCCC CAAAGCATGA ACATTATCTC AGTCTTAGTA
Consensus cAGaccCaGG gccCTCcaGA TTAcCCcAGg TTTGTggAGt cTgTGgATGA AtAtcagTTT GtgGAGcGcC TgTTAccggc tACcAGgaTC ccAgatcCCC CAAaGCATGA ACATTATCct AccCctAgTg
261 390
MRPL49_CDS GCTGGCAGCC TCCCAGAGA- -CCCCC---- -CACCCAACC TGCCTTACTT TGTACGACGC TCTCGGATGC ACAACATCCC CGTCTACAAG GACATCACGC ATGGCAACCG GCAGATGACT GTGATCCGGA
MRPL49_mRN GCTGGCAGCC TCCCAGAGA- -CCCCC---- -CACCCAACC TGCCTTACTT TGTACGACGC TCTCGGATGC ACAACATCCC CGTCTACAAG GACATCACGC ATGGCAACCG GCAGATGACT GTGATCCGGA
MRPL49P1 GCTGGCAACC TCCCAGAGAA ACCCCCAACC CCACCCAATC TGCCCTACTT GGTGCAGTGC CCTCAGATGC ACAAAATCCT TGTCTATAAG GACATCACAC ATGGCAACTT TCAGATGACT GTGACCCCAA
MRPL49P2 ACTGGCAGCC TCTCAAAGA- -CCCCC---- --ATCCAACC TGCCCTACTT AGTGCAGCAC TCTCAGATAT ACAACATCCC TGTCTA---- ---------- ----CAACC- ---------- --GGTCGGGA
Consensus gCTGGCAgCC TCcCAgAGA. .CCCCC.... .cAcCCAAcC TGCCtTACTT tGTaCgacgC tCTCgGATgc ACAAcATCCc cGTCTAcaag gacatcacgc atggCAACcg gcagatgact gtGatCcggA
391 520
MRPL49_CDS AAGTGGAAGG GGACATCTGG GCCCTGCAGA AAGACGTGGA AGATTTTCTG AGCCCGCTGC TGGGGAAGAC ACCTGT---- ---------- ---------- CACCCAGGTC AATGAGGTGA CAGGTACCCT
MRPL49_mRN AAGTGGAAGG GGACATCTGG GCCCTGCAGA AAGACGTGGA AGATTTTCTG AGCCCGCTGC TGGGGAAGAC ACCTGT---- ---------- ---------- CACCCAGGTC AATGAGGTGA CAGGTACCCT
MRPL49P1 AGGTGGAGGG GGACATCTGG GCGCTGCTGA AGGATGTGGA GGATTTTCTG AGCCCACTGC TGGGAAAGAC ACCTGTTCCT GTGTACCCGT ACCCGTACCT CAGCCAGGTC AATGAGGTGA CAGGTATGCT
MRPL49P2 GCGCGGAGGA CCATATTTGG GCCCCGCAGA AGAATGTGGA AGATTTTCTG AGTCCACTGC TGGCAAAGAC ATGCATT--- ---------- ---------- -ACCCAGGCC AAAGAGTTGA CAGGTACCCT
Consensus aaGtGGAaGg ggAcATcTGG GCcCtGCaGA AagAcGTGGA aGATTTTCTG AGcCCgCTGC TGGggAAGAC AcctgT.... .......... .......... cAcCCAGGtC AAtGAGgTGA CAGGTAccCT
521 650
MRPL49_CDS ACGGATCAAG GGCTACTTTG ACCAGGAGCT TAA-AGCCTG GCTCTTGGAG AAAGGCTTCT GA
MRPL49_mRN ACGGATCAAG GGCTACTTTG ACCAGGAGCT TAA-AGCCTG GCTCTTGGAG AAAGGCTTCT GAGGCCCAGC CGAG-CAGCC TGC-TTGTCA GCATGCCCTG TGGATCAAGT CTAGGGGGCC TCAGGAGGAG
MRPL49P1 GCAGGTCAGG GGAGACTTTT TTTTTTTTTT TGTGAGACAG AGTCTCGCTC TGTTGCCCAC GCTGGAGTGC AGTGGCGTGG TGCGATCTCG GCT--CACTG CAACCTCCAC CTCCACCTCC CGGGTTCAAG
MRPL49P2 GCAGGTCAAG GGCTACTTTG ACCAGCAGCG CAA-AGCCTG GCTCCTGAAG AAGGGCTACT GAGGTCCAGC AGAG-CAGCT TGC-ATGACA ATATCCCCAC AAGCTGCACT CCAAGGAACC TCAGGAGGAA
Consensus aCgGaTCAaG GGctACTTTg accaggagct taa.AGcCtG gcTCttGgag aaagGCttct Ga.g....gc .g.g.c.... tgc..t..c. .....c.c.. .......... c.......cc ...g....a.
651 780
MRPL49_CDS
MRPL49_mRN GGAGGTGGGT GTTGGAGCC- CCTGAG-ACA GGGGATACAG AAACTAGGGC TAAAGGACTT TGGGGTCAGG CCTTGCTTGC ATAAAGGAGA AAACAACTCT ATGTACATGC TGGGGGAGAG TGCCTAA---
MRPL49P1 TGATTCTCCT GCCTCAGCCT CCTGAGTAGC TGGAACTCAG GCGCACCCTG CCACGCCCGG CTAATTTTTG TATTTTTAGT AGAGATGGGG TTTCACGATG TTGGCCAGGA TGGTCTCGAT TTCCTGACCT
MRPL49P2 TAAGGTGGGT TTTGGAGCCT --TGAG-ACA GGCAATCCAG AGACTCGGGC TAAGG----- ---------G ATTTGGTGGG GCAGAGTGAA GGCCAAAAGG ATTCTTTGTT AGGTCTTAGT TGCATAA---
Consensus ..a......t .....agcc. ..tgag.a.. .g..a..cag ...c...... ..a.g..... .........g ..tt..t.g. ..a.a..... ...ca..... .t........ .gg....... t.c.t.a...
781 910
MRPL49_CDS
MRPL49_mRN TGTGGGAGAC CAAATAGGGA TCACCAGGCT AATGGGGGGC GTCACGAGCT TTCTCTCCCT -CCTATCTTG GCCTGTTCTT TTTTGTTTTT TGAGACGGAG TCTCACTCTG TTGCCCAGGG TGGAGTGCAG
MRPL49P1 TGTGATCTAC CTGCCTAGAC TTCCCAAAGT GCTGGGA--- -TTACAGGCA TGATC---CA -CCGTGCCCG GCCAGGAGAC TTTGATCAGT AGCTCAAGAC TGACTC-CTG GAGAAGGGTT TCTGAGGCCC
MRPL49P2 AGTGGGAAAC AAGA------ --CCCTATGT ACAGGTGGCA GCACTAGGTG AGCACTACCT GCCAGGAACA GCCAAGCTAG TGGGGGCTAT T-AGCTCTTG TCCCTCCCCA TCACCTTG-- ------GCCC
Consensus .gtg....ac .......... ...cc....t ...gg..... .......g.. ....c...c. .cc....... gcc....... t........t .......... t..c.c.c.. .......g.. ......gc..
911 1040
MRPL49_CDS
MRPL49_mRN TGGCATGATC TTGGCTCACT GTCAACTTCC ACC-TCTGGG ATCAAGGATT CTCCTGCCTC AGCCTCTTGA GTAGCTGGG- ATTACAGGC- -----GCCCA CCACCACAGC CTGCTAATTT TTGTATTTTT
MRPL49P1 AGCTGAGCAG CCTGCACCAT GGCGTACCCC ACAGACTAGA GTCCAGAAGA CCTCAGGAAG AGAGAATGTT GCCCAAGGAT AGTGCTGGCT TGCAAGTAAA CCCTCACT-C CTGTTGATTC CAGGCCACTG
MRPL49P2 ATCCCTGCTT TCCCTTCATT GGTG--CTCC TTGGGTGCAG CTATTAAAAT TCTAGGGGTT GTCACCTGGT GAAAGCAATA ACCTAACTCC ATTTAGGAGA CTGTAGCAGA GGGCAGATTC ATTGGGTACA
Consensus ......g... ......c..t g.......cc .......... .t.....a.. .....g.... ......t... g......... a.......c. .....g...a c.....c... ..g...att. ..........
1041 1170
MRPL49_CDS
MRPL49_mRN AGTAGAGATG GGGTTTCA-- CCATGTTGGC CAGGCTGG-T CTCAAACTCC TGACTCGAAG TGATCCGCCC ACCTTGGCCT CCCAAAGCGT TGGGATTATA GGCATGAGCC ATGTGCCTGG TCCACCTTGG
MRPL49P1 TCAAGT-CTA GGGCCTCA-- GCAAG----- CAAAAGGA-G CCCGATACGC TGATCCTATG TCACAAGCCC TAGCAATCAT T--AATGCAA TTTTCTATTT GGC-TATATA TAGTATTTAA GTCACTAAAA
MRPL49P2 TTCCTTCCTT GGTCCTCTGG CCTTCCAGAG CTCACTGCCA CAAATTTACC TGAGCCCTTG TCCTAGTTCA GACCTGGCTT GGCAGAGGCT ATGGAGAACA --CAGATGAT TCAGGCATGG GTCTTGGGGG
Consensus ........t. gg...tc... .c........ c.....g... c........c tga..c...g t.......c. .......c.t ...a..g... .......... ..c....... .......t.. ..c.......
1171 1300
MRPL49_CDS
MRPL49_mRN CCTGTTTTGT TTTT-CTTTC CTTGGGCTCA GCAATTCAAA TTCTAGTTGT TATTTGGTGG AAGCAGTAGC CCAACCCCAG TTTAGGGGAA GGTAGCACAG GGCAGAGCCA CTGGGCACTT TGTTTCC---
MRPL49P1 TTTGTACAAT ATTTACAAAT TAAATAATCA TCTGAAGCTG TGCAAAAATA AATCGCAAGT ATGAGTATAT TGTTTTAAAA TATTGAGGAA AGTATCAAAA ---TTAACAG CTAAACCAGT TGTAA-----
MRPL49P2 TCT--TCTGT ---TCCAAGT GCAGTGCTGA GCATGAGACA CAGAGTTCCT CTGTTAGCCA CTGAATTATT TCTACCTGA- TGGAGGAGTA AGAGGCCCAG A-CTGGGTGC CTGTTCCATT CCAGACCAGA
Consensus ..t......t ...t.c.... .......t.a .c........ .......... .......... ..g....... ........a. t...g..g.a .g...c..a. .......... ct...c...t ..........
1301 1430
MRPL49_CDS
MRPL49_mRN -TTGGCC-CT CCGAAGCTCA CTGTTGCAAA TACCCCCAAG CCTTTGCTCT AGGCCAGATC TTGTTTGGTG CAG-GTGATG GAGAACACAG ATGACTCGGG CATGGGTCTT GGAGATCTTC TG---TTCAA
MRPL49P1 -GTGGCTGAT TCCAGGAACA GGGACGGTAT TA------GG ATGGTGGGTG GGACCTGTTA AGGAG-GAAA CTG-GTTAAA -AGATTACTG TTTTTCATTG TAAGCCTTTT AGGGCTATTT TAATTTTTAA
MRPL49P2 CTTGGGTCTA ACCGGGTTTC CAGCTCCAGG AGAT---TAA GTGATTCGCT TTGGCAGGGC TGGCCACAAG CAGTGCCTGG GAGCTCCAAG TAGTCCAGTA TAGGGCTATC CTCCCCAGCC TGCTGACCTG
Consensus ..tgg..... .c...g.... ..g....... .......... ....t..... ....c.g... ..g....... c.g.g..... .ag......g .......... .a.g..t.t. .......... t.........
1431 1560
MRPL49_CDS
MRPL49_mRN AGTACAGTGC TGGCACTGGC ACAGAGTGCC --CACGTTA- -GCCCCGGGC TCTG-ATAGA GAGGTAGGAG GCACGTT--C TTGGTCACTG TTCCATTGCA GACCAGACTT GCTGGC-CTG ACCACAAGGG
MRPL49P1 TATGTTTTAC TTAGATAAGG AATAAAAACT --AATGTAAA AGAAAAAAAA TCCGGATATA GTATTTTAAT TAGCATT-GT TTGGTTTGTT TTC---TAAA TTATAGTTTC AAAGGC-A-G ACAGCAAAGA
MRPL49P2 GAATCAAGGC TGGATGGGGG TTTGCAGGCA GGAAGATGCT GGCCTTTAAA CCCGGCCATC CCATCCCATC CCACCCCCAA TCAGCTAGCC ATCACACCCA GGCCATACTT GGAATCACAG GCGCCAAGGG
Consensus .........c t.......g. ........c. ...a..t... .g........ .c.g...a.. .......... ...c...... t..g...... .tc......a ....a...t. .....c...g .c..caa.g.
1561 1690
MRPL49_CDS
MRPL49_mRN AGTG-GCTGG GAACTCACAG CCAGCATAGG GACAT-CCCC CTGCAGCCTT -CTGACCTGC AATCAAGGCT GGGGAGGGGT TTGCAGGCAG GAATATGCTG AC---CTTTC ACCCTGCCAT CCCATCC-CA
MRPL49P1 CTTT-G-GGG CAGATAACTA TGTAAATTGA CTAAT-CTTT CGAATGCTTT -CTCTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT -CTTCCTCTT TCTTTCTCTC TCTCTTTCTT CCTTTCCTCT
MRPL49P2 CCTGAGTTCT CACCCCCATC CCATCCTAGC ATCAAACTGG CTAAGACATG GTTCAGATAC TAGCTCTCCT CCATGGTCTC TGACCTAAGG TAGGGTACTG AATTTCTTTG GGACTCAGTT TCTTTATATG
Consensus ..t..g.... .a........ ......t.g. ...a..c... c.....c.t. ..t....t.c ...c.....t .......... t..c...... .......ct. .....ct.t. ...ct....t .c..t.....
1691 1820
MRPL49_CDS
MRPL49_mRN ACCCCAGCTC ACTAGCCTTC ATATATGCCT TATACTTGGA G-TCACAGGG GCCAAAGGCC TGAGAC--CC CACCCTGCCC CCAAACTGGC TAAGACAGCT TTCAGTTCCT GACTCCCCAA C---TTGGTC
MRPL49P1 TTCTTTTCTT TCTTTCTTTC -TCTCTTTCA GATGCAGGGT GGTGGGGGGG GGGGTTCTCC TTATATTGCC CAGCCCAGAC TCGAACCCCT GCAAAAAGCC CTCCACCTCA GCCTCTAGAG TAGGTGGGGC
MRPL49P2 TAAAATGGGC ACATCTTTGT AAGGATATTC CTGGCTTACA TGTTAAAC-- -CCTCACTCC TGGAGACTCC AGGACC-CTC TCAAGTCTAA AGCCTCTGCA AAGAAAAGGA G-CTCAATAC A---TTGATT
Consensus .......... .c.....t.. .....t.... ....c..... ..t....... ........cc t.......cc ....c....c .c.a...... .......gc. .......... g.ctc...a. ....t.g...
1821 1950
MRPL49_CDS
MRPL49_mRN T-CTGCCCTG AAGCAGGGCA CTGAACTCTG GGC-TGCTTC TCTG--TGTG TAAAATGGGC ACATCTTCCT -------AAT CT-GTTAATG GTCAGTGGTG TCCCCAAG-G ATAGTGCTGG ----------
MRPL49P1 TACAGGCATG CGACACTGCA TCCAGCTAAT C-C-TGCAAA TATTGTTAAG TAAACCGGTT AGGTGTCCAA GGGAGAGAAT ATAGTCATAG GTTCCTAGTT TCTATTTGTG ATTGGGCTGG TAAAGCCCCT
MRPL49P2 TAATGACATA AGCCCCACCA ATCATTAATG CAAATTTTTA GTTAGCTGTA TATACGATTC AAGCTATTAA AATTTTTACA ATATTTACAA ATTAGT--CT TCCGAAAAAA AAATGCCTTA CAAGGAACTA
Consensus t...g.c.t. ...c....ca ...a...... ....t..... ..t...t... ta.a...... a......... .......a.. .t..t.a... .t...t.... tc........ a.....ct.. ..........
1951 2080
MRPL49_CDS
MRPL49_mRN ----CTTCCA TGGAAACCCT CACTC-CTGG AGATTCCATT CCATTTTCAA GTGTACAGCC ACAGCAAGGA GCCCGACACT GATTTGATCG ATTCTGTGAC ACAAACCCCA CCAA----TT GTTAATGCAA
MRPL49P1 TCCTCATCCC TCTTTTCCTT TCATCACTGG AGACAGAAAC TAAAAACCAT GGCTTCAG-- GCTGCTAAAA GCCTAAAACA AAAC--AACA GAACTGCAAC AACAACAACA AAATAAGGTG GCTTGGACAA
MRPL49P2 GTACTGACAA TAATGACAAG TCAAGATTAT TTGAATTGCA TCAAATATTT CCATAACACT TATAAATATA AAATAAGACA TAAAAATAAG AATAAAAATA TGAAATGATA ACATAATTTA AAATAAGAAT
Consensus .......c.. t.....c... .......t.. .......... ..a....... ...t...... .........a .....a.ac. .a........ .......... ...aa....a ..a.....t. ........a.
2081 2167
MRPL49_CDS
MRPL49_mRN GTTTTTATTT GGCTGTATAT ACAATTTAAG CTATTAAA-- --ATTTGTAC AATATTTACA AATTAAAAAA AAAAAAAAAA AA
MRPL49P1 GCTTGAGAAT GTCTTTAGAT GATTCCTCAG CAGGGAGAGG GGAAGTGGAG AGTGGGAACA TACAATTTCT TGAGAAAATA AACT
MRPL49P2 AAGCATATGC ATCAAAGATT ACTTGCACAG CTAGAAGCCC G-CTCAGAAC TCTAGTCAGT TAAGGAGCAA AATACACATT TAATAGA
Consensus .......... ..c......t ........ag c....a.... ......g.a. ..t....a.. .a........ .....a.a.. .a.....