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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1666 Check: 0 ..
Name: MRPL48_CDS Len: 1666 Check: 8172 Weight: 1.49
Name: MRPL48_mRNA Len: 1666 Check: 6279 Weight: 0.75
Name: MRPL48P1 Len: 1666 Check: 6519 Weight: 0.75
Name: Consensus Len: 1666 Check: 5508 Weight: 0.00
//
1 130
MRPL48_CDS
MRPL48_mRN AGGCCGAGGC GGGCGGATCA CCTGAGGTCG GGAGTTCAAG ACCAGCCTGA CAAACATGGA GAAACCTCAT CTCTAGTAAA AATATAAAAA TTAGGCGGGC GTGGTGGCGG GCACCTGTAA TCCCAGCTAC
MRPL48P1 AATAAAAGA AAGAAAGAAA GAAAAAAAAA GTAGCTGGGC GTGGTGACAT GCACCTGTAA TCCCAGCTAC
Consensus .......... .......... .......... .......... .......... .......... .aa....... ....a..aaa .a.a.aaaaa .tag..gggc gtggtg.c.. gcacctgtaa tcccagctac
131 260
MRPL48_CDS
MRPL48_mRN T----TGGAG AC-------- -AGAATTGCT TGAACCCGAG AGGCGGAGGT GGCAGTGAGC TGAGATCGTG CCACTACACT CCAGCCTGCG CAACA-GAGC GAGACTCCGT CTCAAACAAA CAAAAAA--G
MRPL48P1 TCGGGAGGAG GCTGAGGCAG GAGAATCATT TGAATCTGGG AGTTGGAGGT CGCAGTGAAC TGAGACTGTG CCATTGCACT CCAGCCTGGG CAACAAGAAC AAAATTCCAT CTCAAAAAAA TAAAAAATAG
Consensus t.....ggag .c........ .agaat...t tgaa.c.g.g ag..ggaggt .gcagtga.c tgaga..gtg cca.t.cact ccagcctg.g caaca.ga.c .a.a.tcc.t ctcaaa.aaa .aaaaaa..g
261 390
MRPL48_CDS
MRPL48_mRN TCAG------ -------ATC TGTGCTAGAC GCT------- -GAAAGGAAT TAA--TCAGA CAGGAT---C TCAGTCTTTT AAAGAACTTT CAAATACAGA GAAGAGGTGG TAACAAATCA TTAGTGTATA
MRPL48P1 ACAACTACAA CTAATTTATT TATATTAGTG GCTTCAATTT TGAGGAGTAT TGCGTTAAGA ATGGCTTAGC CCAGGGCCCT TAGTGAGTCT CCCACACTGT GTCAGTTTAC TGATGATTAC TGAAAATAGA
Consensus .ca....... .......at. t.t..tag.. gct....... .ga...g.at t....t.aga ..gg.t...c .cag.....t .a...a.t.t c..a.ac.g. g......t.. t.a..a.t.. t.a...ta.a
391 520
MRPL48_CDS
MRPL48_mRN ATATTGCAAG CGAAAAACCA GAATTGTGTG CTAA----GT ACTGGGGTAA CACAGAGATG GTAATTAATT C--------T TTCTGGAGAA ACAGCAGTGA ATGTGACAAC CTGAGTGAGG GTGGAAAG--
MRPL48P1 GCAATCCAAA GACAGCGCAG CAATTATAAG TTACTGACAA ACTCCCGTCA CTCATCACTG GTGAAGAGCA CCACCAAATT CACCAGATAA GCATCAACAT TTTTTTTCTT TTTTATGTGG AAAGAAAGTA
Consensus ..a.t.caa. ...a...c.. .aatt.t..g .ta....... act...gt.a c.ca....tg gt.a..a... c........t ..c..ga.aa .ca.ca.... .t.t...... .t...tg.gg ...gaaag..
521 650
MRPL48_CDS
MRPL48_mRN -------CAG GAGAATTTCT AGACTCTGAA TTTCAGAAGC TTCCGGAACT AAAATGATGT GGAAGTTGAG TGAGTCTCGG T----GGGAT ATTGC----- ----TGCTGC ACCTG-GTCA AGGCCGTTCC
MRPL48P1 TAACCTACAG AAAAGTTGGA GGAATAGTCC AACAAACACC CACATACCCT TCATTTAATT GTACTCCGTG TTGGTTGCAA ACACCAGGAT ACTTCATCCC TAAATACTTC ACATGTATCT TGTGAGATTA
Consensus .......cag .a.a.tt... .ga.t..... ....a..a.c ..c.....ct ..a.t.a..t g.a....g.g t..gt..c.. ......ggat a.t.c..... ....t.ct.c ac.tg..tc. .g...g.t..
651 780
MRPL48_CDS ATGAGCGGA ACCTTGGAAA AGGTGCTGTG
MRPL48_mRN GTCAGTGTTT TCAGACGCC- ---------- ---CTGGGAA CG---CGGCT GCAGGGTCCG GTCTTCGGTT TGCACAGCTA GAGGCCGCGC A-CAGCAAAG GATGAGCGGA ACCTTGGAAA AGGTGCTGTG
MRPL48P1 AAAATTTCTT TCTGACATAA AACATTATCA CATCTAAGAA AATTAATGTT GGGGGGGCGG GTCTTCGGTT TGCACAGCTA GAGGCCATGC AGCAGCAAAG GATGAGCAGA ACCTTGGAAA AAGTGCTGTG
Consensus ...a.t..tt tc.gac.... .......... ...ct..gaa .......g.t g..ggg.c.g gtcttcggtt tgcacagcta gaggcc..gc a.cagcaaag gATGAGCgGA ACCTTGGAAA AgGTGCTGTG
781 910
MRPL48_CDS CCTGAGGAAC AATACCATTT TTAAGCAAGC CTTTTCTCTC TTAAGGTTTA GAACTTCAGG AGAGAAGCCC ATCTATTCTG TAGGTGGAAT TCTACTAAGT ATCAGTCGGC CCTACAAGAC AAAGCCCACC
MRPL48_mRN CCTGAGGAAC AATACCATTT TTAAGCAAGC CTTTTCTCTC TTAAGGTTTA GAACTTCAGG AGAGAAGCCC ATCTATTCTG TAGGTGGAAT TCTACTAAGT ATCAGTCGGC CCTACAAGAC AAAGCCCACC
MRPL48P1 CCTGAGGAAC AATACCACTT TTAAGCAAGG CTTTTCACTC TTAAGGCTTA GAACTTCAGC AGAGAAGCCC ATCTATTCTG TAGGTGGCAT TCTACTAAGT ACTAGTCGGC CCTACAAGAC AAAGCCCACC
Consensus CCTGAGGAAC AATACCAtTT TTAAGCAAGc CTTTTCtCTC TTAAGGtTTA GAACTTCAGg AGAGAAGCCC ATCTATTCTG TAGGTGGaAT TCTACTAAGT AtcAGTCGGC CCTACAAGAC AAAGCCCACC
911 1040
MRPL48_CDS CACGGCATTG GAAAGTACAA GCACTTAATT AAAGCAGAAG AGCCCAAGAA GAAGAAGGGA AAAGTGGAAG TGAGAGCCAT TAATTTGGGG ACAGATTATG AATATGGGGT TTTAAATATT CATCTGACTG
MRPL48_mRN CACGGCATTG GAAAGTACAA GCACTTAATT AAAGCAGAAG AGCCCAAGAA GAAGAAGGGA AAAGTGGAAG TGAGAGCCAT TAATTTGGGG ACAGATTATG AATATGGGGT TTTAAATATT CATCTGACTG
MRPL48P1 CACGCCATTG GAAAGTACAA GCACCTAATT AAAGCAGAAG AGCCCGAGAA GAAGCA---A AAAGTGGAAG TGAAACTCAT TAATTTGGGG ACAGATGATG AATATGGGGT TTTAAACATT CACCTGCCTG
Consensus CACGgCATTG GAAAGTACAA GCACtTAATT AAAGCAGAAG AGCCCaAGAA GAAGaAgggA AAAGTGGAAG TGAgAgcCAT TAATTTGGGG ACAGATtATG AATATGGGGT TTTAAAtATT CAtCTGaCTG
1041 1170
MRPL48_CDS CATATGATAT GACCCTGGCA GAGAGTTATG CCCAGTATGT TCACAACCTC TGCAACTCTC TCTCCATTAA AGTCGAGGAA AGTTATGCAA TGCCAACCAA AACCATAGAA GTGTTGCAGT TGCAGGACCA
MRPL48_mRN CATATGATAT GACCCTGGCA GAGAGTTATG CCCAGTATGT TCACAACCTC TGCAACTCTC TCTCCATTAA AGTCGAGGAA AGTTATGCAA TGCCAACCAA AACCATAGAA GTGTTGCAGT TGCAGGACCA
MRPL48P1 CATATGACAT GACCCTGGCA GAGAGTTATG CCCAGTATGT TCACAACTTC TGCAACTCTC TCTCCATTAA AGTCGAGGAA AGTTATGTGA TGCCAACCAA AACCACTGAA GTGTTGTGGT TGCAGGACCA
Consensus CATATGAtAT GACCCTGGCA GAGAGTTATG CCCAGTATGT TCACAACcTC TGCAACTCTC TCTCCATTAA AGTCGAGGAA AGTTATGcaA TGCCAACCAA AACCAtaGAA GTGTTGcaGT TGCAGGACCA
1171 1300
MRPL48_CDS AGGCAGCAAA ATGCTCCTGG ACTCAGTGCT TACCACCCAT GAGCGAGTGG TTCAGATCAG CGGTTTGAGT GCTACGTTTG CAGAAATTTT CTTGGAAATA ATCCAAAGCA GTCTTCCTGA AGGAGTCAGA
MRPL48_mRN AGGCAGCAAA ATGCTCCTGG ACTCAGTGCT TACCACCCAT GAGCGAGTGG TTCAGATCAG CGGTTTGAGT GCTACGTTTG CAGAAATTTT CTTGGAAATA ATCCAAAGCA GTCTTCCTGA AGGAGTCAGA
MRPL48P1 AGGCAGCAAA ACGTTCCTGG ACTCAGTGCT TACCACCCAT GAGCGAGTGG TTCACATCAG CAGTTTGAGT GCTACGTTTG CAGAGATTTT CTTGGAAATA ATCCAAAGCA GTCTTCCTGA AGGAGTCAGA
Consensus AGGCAGCAAA AtGcTCCTGG ACTCAGTGCT TACCACCCAT GAGCGAGTGG TTCAgATCAG CgGTTTGAGT GCTACGTTTG CAGAaATTTT CTTGGAAATA ATCCAAAGCA GTCTTCCTGA AGGAGTCAGA
1301 1430
MRPL48_CDS CTGTCAGTGA AGGAGCACAC TGAAGAAGAC TTCAAGGGAC GATTCAAAGC TCGACCAGAA CTGGAAGAAC TGTTGGCCAA GTTGAAGTAG
MRPL48_mRN CTGTCAGTGA AGGAGCACAC TGAAGAAGAC TTCAAGGGAC GATTCAAAGC TCGACCAGAA CTGGAAGAAC TGTTGGCCAA GTTGAAGTAG CTACTGTAGA CCCTTTCATG CCAGCAGTGG TCATATTGAG
MRPL48P1 TTGTCGTTGA AGGAGCACAC TGAAGAAGAC TTCAAGGGAA GATTCAAAGC TCGACCAGAA CTGGAAGAAC GGTTGGCCAA GTTGAACTAG CTACTGTAGA CGCTTTCATG CCAGCACTGG TCATATTGCG
Consensus cTGTCagTGA AGGAGCACAC TGAAGAAGAC TTCAAGGGAc GATTCAAAGC TCGACCAGAA CTGGAAGAAC tGTTGGCCAA GTTGAAgTAG ctactgtaga c.ctttcatg ccagca.tgg tcatattg.g
1431 1560
MRPL48_CDS
MRPL48_mRN TGCCAAAGAG AAGAGCTTAC TGGGTAGTTA GAGTTCATCA GGAGACCCAA CCCTTAGATT TCATAAGTAC CCATTCCCAT AGCCAGTAAT GTCCTCACTC CTCTGTGGCT TGGCTGTACT TGCCATTTCT
MRPL48P1 TGCCAAGGAG AAGAGCTTAC TGGGTGGTCA GAGTTCGTCA GGAGACCTGA CCCTTAGATT TCATAAGTGC CCATTCCCAT ACCCAGTAAT GCCTTCACTC CTCTGTAGCA TGGCTGTACT TGCCATTTGT
Consensus tgccaa.gag aagagcttac tgggt.gt.a gagttc.tca ggagacc..a cccttagatt tcataagt.c ccattcccat a.ccagtaat g.c.tcactc ctctgt.gc. tggctgtact tgccattt.t
1561 1666
MRPL48_CDS
MRPL48_mRN TACCACTTAC CTATGAGGTA ATGCTTGTTA TCTTCCATCT AATAAAAATC TGCTGCAGAT GTGTATATGT AAA
MRPL48P1 TACTGCTTAC CTA------- ACCCTTGTTA TCCTCCATCT AATACAAATC TGCTGCTAAC ATGTATTTTA AAAAAAGAAA ATTAATGTTA ATTCAATATC CTATGA
Consensus tac..cttac cta....... a..cttgtta tc.tccatct aata.aaatc tgctgc..a. .tgtat.t.. aaa....... .......... .......... ......