Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1603 Check: 0 ..
Name: MRPL45_mRNA Len: 1603 Check: 9997 Weight: 0.75
Name: MRPL45P1 Len: 1603 Check: 305 Weight: 0.75
Name: MRPL45P2 Len: 1603 Check: 425 Weight: 1.49
Name: Consensus Len: 1603 Check: 8227 Weight: 0.00
//
1 130
MRPL45_mRN GGCACGA GGTGGCAGCC CCCATACCTC AAGGGTTCTC TTGTTTATCG AGGTTTTTGG GCTGGTGGTT TCGGCA---G CCAGTTCTGG TGACTCAGTC CGCAGCTATA GTTCCAGTAA GAACTAAAAA
MRPL45P1 GCGTGAACAA AATGGCAGCC CCCATATCTC AGGGGTTGTC TCTTTTATCA AGGGTTTTGG GCTGGTGATC TCCGCA---G CCAGTTCTGG TGAGTCAGTC TGCAGCTATA GTTCCAGTAA GAACTAAAAA
MRPL45P2 GCGGGAACAA GATGGCAGCC CTCATACCTC AAGGGTTCTC TTGTTTATCG AGGGTTTTGG GCTGGTGGTC TCGGCACCAG CCAGTTCTGG TGACTCAGTC CGCAGCTATA GTTCCAGTAA GAACTAAAAA
Consensus gcggGaACaA gaTGGCAGCC CcCATAcCTC AaGGGTTcTC TtgTTTATCg AGGgTTTTGG GCTGGTGgTc TCgGCA...G CCAGTTCTGG TGAcTCAGTC cGCAGCTATA GTTCCAGTAA GAACTAAAAA
131 260
MRPL45_mRN AACGTTTCAC ACCTCCTATT TATCAACCTA AATTTAAAAC AGAAAAGGAG TTTATGCAAC ATGCCCGGAA AGCAGGATTG GTTATTCCTC CAGAAAAATC GGACCGTTCC ATACATCTGG CCTGTACAG-
MRPL45P1 A-CGTTTCAC ACCTCCTATT TATCAACCTA AATACAAAAC AGAAAAGGAG TTTATGAAAC ACGCCTGGAA AGCAGGACTG GTTATTCCTC CAGAACGTCT GGATCATCCC ATACATCTGT CCTGTACAG-
MRPL45P2 A-CGTTTCAC ATCTCCTATT TATCAACCTA AATTTAAAAC AGAAAAGGAG TTTATGCAAC ATGCCCGGAA AGCAGGATTG GTTATTCCTC CAGAAAAATC GGACCGTTCC ATACATCTGG CCTGTACAGG
Consensus A.CGTTTCAC AcCTCCTATT TATCAACCTA AATttAAAAC AGAAAAGGAG TTTATGcAAC AtGCCcGGAA AGCAGGAtTG GTTATTCCTC CAGAAaaatc GGAcCgTtCC ATACATCTGg CCTGTACAG.
261 390
MRPL45_mRN --------CT GGTATATTTG ATGCCTATGT TCCTCCTGAG GGTGATGCAC GCATATCATC TCTTTCAAAG GAGGGA---- --------CT GATAGAGAGA ACTGAACGAA TGAAGAAGAC TATGGCATCA
MRPL45P1 --------CT GGTATCTTTG ATGCCTATGT TCCTCCTGAG GGTGATGCTC ACATGCCATC TCTTTCAAAG GAAGGA---- --------CT GAAACAGAGA ACTGAACAAA TGAAGAAGAA TGTGGCATCA
MRPL45P2 TGATACAGCT GGTATATTTG ATGCCTATGT TCCTCCTGAG GGTGATGCAC GCATATCATC TCTTTCAAAG GAGAGATGAT AGAGAGAACT GATAGAGAGA ACTGAACGAA TGAAGAAGAC TATGGCATCA
Consensus ........CT GGTATaTTTG ATGCCTATGT TCCTCCTGAG GGTGATGCaC gCATatCATC TCTTTCAAAG GAggGA.... ........CT GAtAgAGAGA ACTGAACgAA TGAAGAAGAc TaTGGCATCA
391 520
MRPL45_mRN CAAGTGTC-- ----AATCCG GAGGATAAAA GACTATGATG CCAACTTTAA AATAAAGGAC TTCCCTGAAA AAGCTAAGGA TATCTTTATT GAAGCTCACC TTTGTCTAAA TAACTCAGAC CATGACCGAC
MRPL45P1 CAATTTTC-- ----AATCCA GAAGATAAAA GAGGATGACG ACAATTTTGA AACAAAGGAC TTTCCTGAAA AAGCTAAGGA TATATTTACT GAAGTTCACC TTTGTCTAAA CAACTCACAC -ATGACTGAC
MRPL45P2 CAAGTGTCTT ACAGAATCCG GAGGATAAAA GACTATGATG CCAACTTTAA AATAAAGGAC TTCCCTGAAA AAGCTAAGGA TATCTTTATT GAAGCTCACC TTTGTCTAAA
Consensus CAAgTgTC.. ....AATCCg GAgGATAAAA GActATGAtG cCAAcTTTaA AAtAAAGGAC TTcCCTGAAA AAGCTAAGGA TATcTTTAtT GAAGcTCACC TTTGTCTAAA .aactca.ac .atgac.gac
521 650
MRPL45_mRN TTCATACCTT GGTAACTGAA CACTGTTTTC CAGACATGAC TTGGGACATC AAATATAAGA CCGTCCGCTG GAGCTTTGTG GAATCTTTAG AGCCCTCTCA TGTTGTTCAA GTTCGCTGTT CAAGTATGAT
MRPL45P1 TGCATACCTT GGTAACTGAG CACTGTTTTC CAGACATGAT CTGAGACATC AAATATAAGA CCATCCGCTG GAGCTTCCTG GAATCTTTAG AGCCCCACCA TGTGGTTCAA GTTCGCTGTT CAAGTCTGAT
MRPL45P2
Consensus t.catacctt ggtaactga. cactgttttc cagacatga. .tg.gacatc aaatataaga cc.tccgctg gagctt..tg gaatctttag agccc...ca tgt.gttcaa gttcgctgtt caagt.tgat
651 780
MRPL45_mRN GAACCAGGGC AACGTGTACG GCCAGATCAC CGTACGCATG CACACCCGGC AGACTCTGGC CATCTATGAC CGGTTTGGCC GGTTGATGTA TGGACAGGAA GATGTACCCA AGGATGTCCT GGAGTATGTT
MRPL45P1 GAACCAGGGC AACATATACG GCTAG-TCAC CGTAGGCATG CACACCCAGC AGACTCTGGC CATCTGTGAC TGGTTTGGCC GGTTGATGTA TGGACAGGAA GATGTACCCA AGAATGTCCT GGAGTATGTT
MRPL45P2
Consensus gaaccagggc aac.t.tacg gc.ag.tcac cgta.gcatg cacaccc.gc agactctggc catct.tgac .ggtttggcc ggttgatgta tggacaggaa gatgtaccca ag.atgtcct ggagtatgtt
781 910
MRPL45_mRN GTATTCGAAA AGCAGTTGAC AAACCCCTAT GGAAGCTGGA GAATGCATAC CAAGATCGTT CCCCCATGGG CACCCCCTAA GCAGCCCATC CTTAAGACGG TGATGATCCC TGGCCCTCAG CTGAAACCAG
MRPL45P1 GTATTTGAAA AGCACCTGAC AAACCCCTAT GGAAGCTGGA GAATGCATGG CAAGATCGTT CCCCCATGGG CACCCGCTAA GCA--CCATC CTTAAGATGG TTATGATCCC TGGCCCTCAG CTGAAACCAG
MRPL45P2
Consensus gtatt.gaaa agca..tgac aaacccctat ggaagctgga gaatgcat.. caagatcgtt cccccatggg caccc.ctaa gca..ccatc cttaaga.gg t.atgatccc tggccctcag ctgaaaccag
911 1040
MRPL45_mRN AAGAAGAATA TGAAGAGGCA CAAGGAGAGG CCCAGAAGCC TCAGCTAGCC TGATGACAAA AATGACTTCT AGGGTGAAGC CTGGGTGATG AGGCTGCTGG AAGCTTTGAA GTCTCCCATT CCCCTCATGC
MRPL45P1 GGGAAGAATA TGAAGAGGCA CAAGGAGAGG CCCAGAAGCC TCAGCTAGCC TGATGGCAA
MRPL45P2
Consensus ..gaagaata tgaagaggca caaggagagg cccagaagcc tcagctagcc tgatg.caa. .......... .......... .......... .......... .......... .......... ..........
1041 1170
MRPL45_mRN TATAAAAAGA ACTACCTTTG TTCTCTCCCA TCCTGCTCAG GTCTTTTCAG CAGTCTCATC ATCAGCAACC ATGACTGATG ACTGGGCCCT AGCAGGTGGC AGGTATAACA TGGCCATGGA CACTCTTCTT
MRPL45P1
MRPL45P2
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
1171 1300
MRPL45_mRN TTTTAAATTT TATGTCTAGC TTCTGAGTCT AGATGAAAGA CAGTATGTTT CAGAGAACAT TGGATATCAG TTTTTCCCAC AGCAGGGACT GTGAGAGACA ACCAGCAGCA TCCTCTTTGT AATCACAGGG
MRPL45P1
MRPL45P2
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
1301 1430
MRPL45_mRN CAGGGATCAG AGTTTGAAAT GAAATGTTGT CAGGGTGTTG GAAAAATTTT GGTGAGTTCT GCACATTTCC CCTGGTTCAG GCTGGGCATG GACCAGCCTT CAGATGGCAG AAGTGGAAGA TGAGCCTACT
MRPL45P1
MRPL45P2
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
1431 1560
MRPL45_mRN TGTGAGCGAT GTGACTTTAA GGAAATGAAG ACTGGGGAAG AATAATTAGT GTTTATAAGA CATTTAAGAG GCCCTTTTTC ATATACTGAC TCACTGATGA ATCAGCATTT GCATTTTATG GAAAAATATA
MRPL45P1
MRPL45P2
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
1561 1603
MRPL45_mRN AATCCAAAGA AATAATTTAT CCCTTAAAAA AAAAAAAAAA AAA
MRPL45P1
MRPL45P2
Consensus .......... .......... .......... .......... ...