Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 975 Check: 0 ..
Name: MRPL32_CDS Len: 975 Check: 7749 Weight: 1.49
Name: MRPL32_mRNA Len: 975 Check: 3937 Weight: 0.75
Name: MRPL32P1 Len: 975 Check: 7872 Weight: 0.75
Name: Consensus Len: 975 Check: 5255 Weight: 0.00
//
1 130
MRPL32_CDS AT GGCGCTGGCC ATGCTGGTCT TGGTGGTTTC GCCGTGGTCT GCGGCCCGGG GAGTGCTTCG AAACTACTGG GAGCGACTGC
MRPL32_mRN CATGCTGAA AGCAGGGCGG GACCGG-GGC GGTCTTCCAG CAGGGAAAAT GGCGCTGGCC ATGCTGGTCT TGGTGGTTTC GCCGTGGTCT GCGGCCCGGG GAGTGCTTCG AAACTACTGG GAGCGACTGC
MRPL32P1 ATTAATTGAT CTTATAGTGT GAATATTGAC AGTGTGAATA TAGGGTGAAT ATTAC--GCG GTTTTGTTTT GTTTTGTTTT GTTTTTTTAT TGAGACAGGG TCTCGCT--G TTAC--CCAG GCCAAAATGC
Consensus ......tga. ...a..g.g. ga.....g.c .gt.t..... .aggg..aAT ggcgCtgGCc aTgcTGgTcT tggTgGTTTc GccgTggTcT gcgGcCcGGG gagtGCTtcG aaACtaCtgG GagcgAcTGC
131 260
MRPL32_CDS TACGGAAGCT TCCGCAGAG- CCGGCCGGGC TTTCCCAGTC CTCCGTGGGG ACCAGCATTA GCAGTACAGG GCCCAGCCAT GTT--TACAG AGCCAGCAAA TGAT------ -----ACCAG TGGAAG----
MRPL32_mRN TACGGAAGCT TCCGCAGAG- CCGGCCGGGC TTTCCCAGTC CTCCGTGGGG ACCAGCATTA GCAGTACAGG GCCCAGCCAT GTT--TACAG AGCCAGCAAA TGAT------ -----ACCAG TGGAAG----
MRPL32P1 CAC--TCACC GCAGCCTAGA CCTTCCAGGC TCAAGCAGTC CTCCCACCTC AGCCTCCCAA GTAGCTAGGA CCACAGGCGT GCACCATCAC ACCCGGCTAA TTTTTATTTT GGTTTAACAG GGGCAGGGGG
Consensus tACggaagCt tCcGCagAG. CCggCCgGGC TttccCAGTC CTCCgtgggg AcCagCattA GcAGtacaGg gCcCAGcCaT Gtt..taCAg AgCCaGCaAA TgaT...... .....AcCAG tGGaAG....
261 390
MRPL32_CDS ----TAAAGA GAATTCCAGC CTTT------ -----TGGAC AGTATCTTTT GGATGGCAGC --TCC-CAAA AATAGACGCA CCATTGAAGT ----TAACCG GTGTAGGAGA AGAAATCCGC AGAAGCTTAT
MRPL32_mRN ----TAAAGA GAATTCCAGC CTTT------ -----TGGAC AGTATCTTTT GGATGGCAGC --TCC-CAAA AATAGACGCA CCATTGAAGT ----TAACCG GTGTAGGAGA AGAAATCCGC AGAAGCTTAT
MRPL32P1 CAGGTGGCGG GTGCGCCTCA CTGTGTTGCC CGGGTTGGTT TGGAACTTCT GGGTTCAAGC GTTCCTCCTG CCTCAGCCTC CTAAAGTGGT GGAATTACAG GTGTGAGCCA CCGCACCCAG CCCAGATGTA
Consensus ....TaaaGa GaattCCagc CTtT...... .....TGGac aGtAtCTTtT GGaTggcAGC ..TCC.Caaa aaTagaCgca CcAttGaaGT ....TaACcG GTGTagGagA agaaAtCCgc agaAGcTtat
391 520
MRPL32_CDS TAAAGTTAAG AACAACATAG ACGTTTGTCC TGAATGTGGT CACCTGAAAC AGAAACATGT CCTTTGTGCC TACTGCTATG AAAAGGTGTG CAAGGAGACT GCAGAAATCA GACGACAGAT AGGGAAGCAA
MRPL32_mRN TAAAGTTAAG AACAACATAG ACGTTTGTCC TGAATGTGGT CACCTGAAAC AGAAACATGT CCTTTGTGCC TACTGCTATG AAAAGGTGTG CAAGGAGACT GCAGAAATCA GACGACAGAT AGGGAAGCAA
MRPL32P1 CTTACATTTA AAAAATATAG ACATTTGTTC TGAATGTGAT CACCTGTAAC AGAAACATGT CCTTTGGGGC CACTGCTATG AGAAGGTGGG CAGGGACACT GCAGAAGTCA GACGACAGAT AGGGAAACAA
Consensus taaAgtTaag AAcAAcATAG ACgTTTGTcC TGAATGTGgT CACCTGaAAC AGAAACATGT CCTTTGtGcC tACTGCTATG AaAAGGTGtG CAaGGAgACT GCAGAAaTCA GACGACAGAT AGGGAAgCAA
521 650
MRPL32_CDS GAAGGGGGCC CTTTTAAGGC TCCCACCATA GAGACTGTGG TGCTGTACAC AGGAGAGACA CCGTCTGAAC AAGATCAGGG CAAGAGGATC ATTGAACGAG ACAGAAAGCG ACCATCCTGG TTCACCCAGA
MRPL32_mRN GAAGGGGGCC CTTTTAAGGC TCCCACCATA GAGACTGTGG TGCTGTACAC AGGAGAGACA CCGTCTGAAC AAGATCAGGG CAAGAGGATC ATTGAACGAG ACAGAAAGCG ACCATCCTGG TTCACCCAGA
MRPL32P1 GA---GGGCC CTTTTAAGGC TCCCACTGTA GAGACTATGG TGTTGTACAT GGGAGCGACG CTGTCTGAAC AAGATCAGGG --TGAGGATC ATAGAACGAG ACAGGAAGCA GCCATCCTGG TTCACCCACA
Consensus GAaggGGGCC CTTTTAAGGC TCCCACcaTA GAGACTgTGG TGcTGTACAc aGGAGaGACa CcGTCTGAAC AAGATCAGGG caaGAGGATC ATtGAACGAG ACAGaAAGCg aCCATCCTGG TTCACCCAgA
651 780
MRPL32_CDS ATTGA
MRPL32_mRN ATTGACACCA AAGATGTTAA AAGGATAACT TCACAGTAAA TCATTTCTCC TGAAATAGAG GAAGATTCT- ---TTACGTT GTTGTGCTTG TTTTTAAATC ATCAGTATAG TTTAACACAT TCTTTCTAAG
MRPL32P1 ATTAACACCA AAGATGTTAA AAGGTTAAAT TCACAGTAAA TCATTTCTCC TGAAATAGAG GAAGATTCTG TCTTTATGTT GTTGTGCTTG TTTTTAAATC ATCAATATAG TTTAACACAT TCT----AAG
Consensus ATTgAcacca aagatgttaa aagg.taa.t tcacagtaaa tcatttctcc tgaaatagag gaagattct. ...tta.gtt gttgtgcttg tttttaaatc atca.tatag tttaacacat tct....aag
781 910
MRPL32_CDS
MRPL32_mRN CAGTTTTGTG TGGGATAATT TGAAGAATAT ----ATTATG AGTAAACTCC GAAAATTTTG TTTATCCAAA GGCTCAATGG ATTATGTTT- CTATTATATA CAAGGTTTTA AGTAAACATA AA-----ATT
MRPL32P1 CAGTTTTGTG TGGGATAATT TGAAGGACAT GGGTAAACTC TAAAAAATCT TTTCATGTTA TCTATGATAA CTAGCAAGGA AAATAGCTGG ATGATGAGTA GGTGAACTTG CTTTCTCAAG TAGGCACATT
Consensus cagttttgtg tgggataatt tgaag.a.at ....a...t. ...aaa.tc. ....at.tt. t.tat...aa ....caa.g. a....g.t.. .t..t...ta ...g...tt. ..t...ca.. .a.....att
911 975
MRPL32_CDS
MRPL32_mRN TCCAGAACAA AAATAA---- AAAATTTAAA ATTCATAGCA AAAAAAAAAA AAA
MRPL32P1 CCCTAAGTAA AGGTTTTTGT ATGAGTTAAG CCTCATGGTA GATAAACTTG GATAGCAACA TATAA
Consensus .cc..a..aa a..t...... a..a.ttaa. ..tcat.g.a .a.aaa.... .a........ .....