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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1814 Check: 0 ..
Name: MRPL3_CDS Len: 1814 Check: 9369 Weight: 1.49
Name: MRPL3_mRNA Len: 1814 Check: 4015 Weight: 0.75
Name: MRPL3P1 Len: 1814 Check: 3236 Weight: 0.75
Name: Consensus Len: 1814 Check: 7755 Weight: 0.00
//
1 130
MRPL3_CDS
MRPL3_mRNA GCTTTCTTTC CGTCGCAGAG AGCATCGGCC GGCGACCGTT CC------GG CGGCCATTGC GAAAACTTCC CCACGGCTAC TGCGTCCACG TGGCGGTGGC
MRPL3P1 GTACCACAGT TTATTCATTC ACCTACGGAG GATATCTTG- -GTTGCTTAT AAAATTGGTT GAAGGAAGGG CATCGGCTGG CGGCCATTGC AGCGACTTCC CCATGGCTGC TGCGTCCGCG TGGTGGTGGC
Consensus .......... .......... .......... g.t.tctt.. .gt.gc..a. a..at.gg.. g..g...g.. c.......gg cggccattgc ....acttcc cca.ggct.c tgcgtcc.cg tgg.ggtggc
131 260
MRPL3_CDS ATGCCGGGTT GGAGGCTGCT GACGCAGGTC GGCGCCCAGG TGCTGGGTCG ACTCGGGGAC
MRPL3_mRNA GTGGGGACTC CCTGAAAGCA GAGCGGCAGG GCGCCCGGAA GTCGTGAGTC GAGTCTTCCC GGGCTAATCC ATGCCGGGTT GGAGGCTGCT GACGCAGGTC GGCGCCCAGG TGCTGGGTCG ACTCGGGGAC
MRPL3P1 GTGGGGACGC CCTGAAAGCA GAGCAGCTGG GCACCCGGAA GTCATGAGTT GAGTCTTCCC GGGCTAATCC ATCCCGGGTT GGAGGCTGCT GATGCAGGTC GGCGCCCAGG TGCTGGGTCA AGTCGGGGAT
Consensus gtggggac.c cctgaaagca gagc.gc.gg gc.cccggaa gtc.tgagt. gagtcttccc gggctaatcc ATgCCGGGTT GGAGGCTGCT GAcGCAGGTC GGCGCCCAGG TGCTGGGTCg AcTCGGGGAc
261 390
MRPL3_CDS GGCCTGGGTG CTGCCCTGGG CCCGGGGAAC AGAACACACA TCTGGCTTTT TGTTAGAGGT CTTCATGGAA AGAGTGGTAC ATGGTGGGAT GAGCATCTTT CTGAAGAAAA TGTCCCATTC ATTAAGCAGT
MRPL3_mRNA GGCCTGGGTG CTGCCCTGGG CCCGGGGAAC AGAACACACA TCTGGCTTTT TGTTAGAGGT CTTCATGGAA AGAGTGGTAC ATGGTGGGAT GAGCATCTTT CTGAAGAAAA TGTCCCATTC ATTAAGCAGT
MRPL3P1 GGCCTGGGTG CTGCCCTGGG CCCGGGGAAC AGAACACACA TCTGGCTTTT TGTTAGAAGT CTTCATGGAA AGAGTGGTAC GTGGTGGGAT GAGCATCTTT CTGAAGAAAA TGTCCCATTC ATTAAGCAGT
Consensus GGCCTGGGTG CTGCCCTGGG CCCGGGGAAC AGAACACACA TCTGGCTTTT TGTTAGAgGT CTTCATGGAA AGAGTGGTAC aTGGTGGGAT GAGCATCTTT CTGAAGAAAA TGTCCCATTC ATTAAGCAGT
391 520
MRPL3_CDS TGGTCTCTGA TGAAGATAAA GCCCAATTAG CAAGTAAACT GTGTCCTCTG AAAGATGAAC CATGGCCTAT ACATCCTTGG GAACCAGGTT CCTTTAGAGT TGGTCTTATT GCCTTGAAGC TGGGCATGAT
MRPL3_mRNA TGGTCTCTGA TGAAGATAAA GCCCAATTAG CAAGTAAACT GTGTCCTCTG AAAGATGAAC CATGGCCTAT ACATCCTTGG GAACCAGGTT CCTTTAGAGT TGGTCTTATT GCCTTGAAGC TGGGCATGAT
MRPL3P1 TGGTCTCTGA TGAAGATAAA ACCCAATTAG CAAGTAAACT GTGTCCTCTG AAAGATGAAC CATGGCCTAT GCATCCTTGG GAACCAGGTT CCTTTAGAGT TGG------- -CCTTGAAGC TGGGCATGAT
Consensus TGGTCTCTGA TGAAGATAAA gCCCAATTAG CAAGTAAACT GTGTCCTCTG AAAGATGAAC CATGGCCTAT aCATCCTTGG GAACCAGGTT CCTTTAGAGT TGGtcttatt gCCTTGAAGC TGGGCATGAT
521 650
MRPL3_CDS GCCTTTATGG ACCAAGGATG GTCAAAAGCA TGTGGTCACA TTACTTCAGG TACAAGACTG TCATGTCTTA AAATATACGT CAAAGGAAAA CTGTAATGGA AAAATGGCAA CCCTGTCTGT AGGAGGAAAA
MRPL3_mRNA GCCTTTATGG ACCAAGGATG GTCAAAAGCA TGTGGTCACA TTACTTCAGG TACAAGACTG TCATGTCTTA AAATATACGT CAAAGGAAAA CTGTAATGGA AAAATGGCAA CCCTGTCTGT AGGAGGAAAA
MRPL3P1 GCCTTTATGG ACCAAGGATG GTCAAAAGCA CGTGGTCACA TTACTTCAGG TACAAGACTG TCATGTCCTA AAATATACTT CAAAGGAAAG CCGTAATGGA AAAACGGCAG CCCTGTCTGT AGGAGGCAAA
Consensus GCCTTTATGG ACCAAGGATG GTCAAAAGCA tGTGGTCACA TTACTTCAGG TACAAGACTG TCATGTCtTA AAATATACgT CAAAGGAAAa CtGTAATGGA AAAAtGGCAa CCCTGTCTGT AGGAGGaAAA
651 780
MRPL3_CDS ACTGTATCAC GTTTTCGTAA AGCTACATCC ATATTGGAAT TTTACCGGGA ACTTGGATTG CCGCCGAAAC AGACAGTTAA AATCTTTAAT ATAACAGATA ATGCTGCAAT TAAACCAGGC ACTCCTCTTT
MRPL3_mRNA ACTGTATCAC GTTTTCGTAA AGCTACATCC ATATTGGAAT TTTACCGGGA ACTTGGATTG CCGCCGAAAC AGACAGTTAA AATCTTTAAT ATAACAGATA ATGCTGCAAT TAAACCAGGC ACTCCTCTTT
MRPL3P1 -CTGTATCAC GTTTTCATAA AGCTACACCT GTATTGGAAT TTTACCGAGA ACTTGGATTG CCGTCAAAAC AGACAGTTAT AATCTTTAAT GTAACAGATA ATGCTGCAAT TAAACCAGGC ACTCCTCTTT
Consensus aCTGTATCAC GTTTTCgTAA AGCTACAtCc aTATTGGAAT TTTACCGgGA ACTTGGATTG CCGcCgAAAC AGACAGTTAa AATCTTTAAT aTAACAGATA ATGCTGCAAT TAAACCAGGC ACTCCTCTTT
781 910
MRPL3_CDS ATGCTGCTCA CTTTCGTCCA GGACAGTATG TGGATGTCAC AGCCAAAACT ATTGGTAAAG GTTTTCAAGG TGTCATGAAA AGATGGGGAT TTAAAGGCCA GCCTGCTACG CATGGTCAAA CGAAAACCCA
MRPL3_mRNA ATGCTGCTCA CTTTCGTCCA GGACAGTATG TGGATGTCAC AGCCAAAACT ATTGGTAAAG GTTTTCAAGG TGTCATGAAA AGATGGGGAT TTAAAGGCCA GCCTGCTACG CATGGTCAAA CGAAAACCCA
MRPL3P1 ATGCTGCTCA CTTTTGTCCA GGACAGTATG TGGATGTCAC AGCCAAAACT ATTGGTAAAG GTTTTCAAGG TGTCATGAAA AGATGGGGAT TTAAAGGCCA GCCTGCTACA CATGGTCAAA CGAAAACCCA
Consensus ATGCTGCTCA CTTTcGTCCA GGACAGTATG TGGATGTCAC AGCCAAAACT ATTGGTAAAG GTTTTCAAGG TGTCATGAAA AGATGGGGAT TTAAAGGCCA GCCTGCTACg CATGGTCAAA CGAAAACCCA
911 1040
MRPL3_CDS CAGGAGACCT GGAGCTGTTG CAACTGGTGA TATTGGCAGA GTCTGGCCTG GAACTAAAAT GCCTGGAAAA ATGGGAAACA TATACAGGAC AGAATATGGA CTGAAAGTGT GGAGAATAAA CACAAAGCAC
MRPL3_mRNA CAGGAGACCT GGAGCTGTTG CAACTGGTGA TATTGGCAGA GTCTGGCCTG GAACTAAAAT GCCTGGAAAA ATGGGAAACA TATACAGGAC AGAATATGGA CTGAAAGTGT GGAGAATAAA CACAAAGCAC
MRPL3P1 CAGGAGACCT GGAGATATTT CAACTGGTGA CATTGGCAGA GTCTGGCCTG GAACTAAAAT GCCTGGAAAA ATGGGAAACA TATATAGAAC AGTATATGGA CTGAAAGTGT GGAGAATAAA CACAAAGCAC
Consensus CAGGAGACCT GGAGcTgTTg CAACTGGTGA tATTGGCAGA GTCTGGCCTG GAACTAAAAT GCCTGGAAAA ATGGGAAACA TATAcAGgAC AGaATATGGA CTGAAAGTGT GGAGAATAAA CACAAAGCAC
1041 1170
MRPL3_CDS AACATAATCT ATGTAAATGG CTCTGTACCT GGACATAAAA ATTGCTTAGT AAAGGTCAAA GATTCTAAAC TGCCTGCATA TAAGGATCTC GGTAAAAATC TACCATTCCC TACATATTTT CCTGATGGAG
MRPL3_mRNA AACATAATCT ATGTAAATGG CTCTGTACCT GGACATAAAA ATTGCTTAGT AAAGGTCAAA GATTCTAAAC TGCCTGCATA TAAGGATCTC GGTAAAAATC TACCATTCCC TACATATTTT CCTGATGGAG
MRPL3P1 AACATAATCT ATGTAAATGG CTCTGTACCT GGACATAAAA ATTGCTTAGT AAGGGTCAGA GATTCTAAAC TGCCTGCATA TAAGGATCTC GGTAAAAATC TACCATTCCC TACGTATTTT CCTGATGGAG
Consensus AACATAATCT ATGTAAATGG CTCTGTACCT GGACATAAAA ATTGCTTAGT AAaGGTCAaA GATTCTAAAC TGCCTGCATA TAAGGATCTC GGTAAAAATC TACCATTCCC TACaTATTTT CCTGATGGAG
1171 1300
MRPL3_CDS ATGAAGAGGA ACTGCCAGAA GATTTGTATG ATGAAAACGT GTGTCAGCCC GGTGCGCCTT CTATTACATT TGCCTAA
MRPL3_mRNA ATGAAGAGGA ACTGCCAGAA GATTTGTATG ATGAAAACGT GTGTCAGCCC GGTGCGCCTT CTATTACATT TGCCTAACAT CTTTGGACGT GGCAGAACCT TACATATTCT GTGAGCTTCG ATGAGCCAGA
MRPL3P1 ATGAAGAGGA ACTACCGGAA GATTTGTATG ATGAAAACGT GTGTCAGCCT AGTGTGCCTT CTATTATGTT TGCCTAACAC CTTTGGATGT GGCAGAACCT TACATATTCT GTGAGCTTTG ATGAGCCAGA
Consensus ATGAAGAGGA ACTgCCaGAA GATTTGTATG ATGAAAACGT GTGTCAGCCc gGTGcGCCTT CTATTAcaTT TGCCTAAca. ctttgga.gt ggcagaacct tacatattct gtgagctt.g atgagccaga
1301 1430
MRPL3_CDS
MRPL3_mRNA GTGATATCAT AACCACCAGA AATCATACTC TCCTTTCTTA GTCACAACAA AATCACACAT GTCATCTTTG TCAAGGGCAT AAATATATCA TTCATACCCC CATTAAATTT TGTTAGAAAA ATTACCACAT
MRPL3P1 GTAATATAAT AATCACCAGA AATCATACTC TCCTTTCTTC GTCACAACAA AATCACACAT GTCATCTTTG TCAAGGGTGT AAATATATCA TTCATACCCC CATTAAATTT TGTTAGAAAA ATTACCACAT
Consensus gt.atat.at aa.caccaga aatcatactc tcctttctt. gtcacaacaa aatcacacat gtcatctttg tcaaggg..t aaatatatca ttcatacccc cattaaattt tgttagaaaa attaccacat
1431 1560
MRPL3_CDS
MRPL3_mRNA TAAATATATG AGTTAAGTAG ATTGGATTTG CTGAAATTGG TGTTGGGCAT ATTAGCAAAA TATTCTTAAT TTGTGGACTC GATTCTTTTT TACTACATAT TTCCCAAGTT ATCTTAAGAT GTCTGTAAAT
MRPL3P1 TAAACATACA AGTTAAGTAG ATTGGATTTG CTGAAATTGG TGTTTGGTGT ATTAGCAAAA TATTCATAAT TTGTGGACTT GATTCTTTTT TACTACATAT TTCCTAAGAT ACCTTAAGAT GTCTATAAAT
Consensus taaa.ata.. agttaagtag attggatttg ctgaaattgg tgtt.gg..t attagcaaaa tattc.taat ttgtggact. gattcttttt tactacatat ttcc.aag.t a.cttaagat gtct.taaat
1561 1690
MRPL3_CDS
MRPL3_mRNA TTAACTTTTA TTAAAGTTTT GTCAATCTTT GTGAAATAGT GGTTGTGGAA CAGTAGAAAA CCATATGGGG ACTATAGTGC AACCTATTTG GGTAAAGAAA CCATTTGCTA AAATGGAGAA AGTAAATAGA
MRPL3P1 TTAACTTTGA TACAAGTTTT GTCAATCTTT GTGAAATAGT GGTTGTGGAA CAGTAGAAAA CCATATGGGG ACTATGGTGC AACCTGTTTC GGTAAAGAAA CTATTTGCTA AAATGGAAAA AGTACATAAA
Consensus ttaacttt.a t..aagtttt gtcaatcttt gtgaaatagt ggttgtggaa cagtagaaaa ccatatgggg actat.gtgc aacct.ttt. ggtaaagaaa c.atttgcta aaatgga.aa agta.ata.a
1691 1814
MRPL3_CDS
MRPL3_mRNA TTTTTATTTA AATTACAGAA ACATGT---- TAAAGGCCGG ACAAAGGAAA GACAATAAAA TCATAAATTA TCGGTCCTGT TTAAAAAAAA AAAAAAAAAA
MRPL3P1 TTTTTATTTA AATTACAGAA ACATGTATGT TAAAGGCTGG ACAAAGGAAA GA--ATCAAA TCATAAATTA TGGGTCCTGT TTACATTTTT GTTGGGAGAG GTGATTTCTT TTTAGTTTTA TCAC
Consensus tttttattta aattacagaa acatgt.... taaaggc.gg acaaaggaaa ga..at.aaa tcataaatta t.ggtcctgt tta.a..... ......a.a. .......... .......... ....