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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 806 Check: 0 ..
Name: MRPL22_CDS Len: 806 Check: 950 Weight: 0.58
Name: MRPL22_mRNA Len: 806 Check: 2102 Weight: 0.58
Name: MRPL22P1 Len: 806 Check: 5495 Weight: 1.12
Name: MRPL22P2 Len: 806 Check: 9134 Weight: 1.72
Name: Consensus Len: 806 Check: 5792 Weight: 0.00
//
1 130
MRPL22_CDS ATGGCGGC GGCAGTACTG GGACAGTTGG GTGCGTTATG GATACATAAC CTGAGGAGCC GGGGGAAGCT GGCCTTGGGT GTTTTACCTC
MRPL22_mRN CGAA AGATGGCGGC GGCAGTACTG GGACAGTTGG GTGCGTTATG GATACATAAC CTGAGGAGCC GGGGGAAGCT GGCCTTGGGT GTTTTACCTC
MRPL22P1 ATTTGAAAA AAGAAATCTC TGG-GTAGGA GGAGGAGGGA AGATAGTGGT TGCAGTACTG GAACAGCTGG GTGCAATGTG GACGCAGTGG CCTTGGCA-- --GGTCTCCT TCATCTCAGC ATTTTACCCC
MRPL22P2 CATTGTATAG TTTCTATTTC TCCCGTAGTA ATCTTTTAAC ATAGTGAGAC TTTGGAAAAA -TACAACTTT GTG--TAGGG GAAAATAATC TCTAAATTCT TAGTAATGTT TCTATTTCTT ATGGCAGCAT
Consensus .att..a.a. .....at.tc t...gtag.a ........a. a.At.G.Ggc tgcaGtActg g.ACAgcTgg GTGc.ttgtG GA.aca.a.c cctagg..c. ..Gg.atgcT tc..tT..gt aTtttAcC.c
131 260
MRPL22_CDS AATCATATAT CCACACAAGT GCT---TCTC TTGACATTTC TCGAAAATGG GAGAAGAAGA ATAAAATTGT TTATCCTCCA CAACTGCCTG GAGAACCTCG GAGACCAGCA GAAATCTACC ACTGTCGAAG
MRPL22_mRN AATCATATAT CCACACAAGT GCT---TCTC TTGACATTTC TCGAAAATGG GAGAAGAAGA ATAAAATTGT TTATCCTCCA CAACTGCCTG GAGAACCTCG GAGACCAGCA GAAATCTACC ACTGTCGAAG
MRPL22P1 AATCCCAGGT CCACACAAGT GCT---TCTC TTGACACTTC TCAAAAATGG GAGAAGAAGA ATAAAACCGT TTATCCTCCA CAACTGCCTG CAGAACCTCA GAGACCAGCA GAAATCTACC AATACCAAAG
MRPL22P2 TTTCTTTAGG CCTAGAAAGT AAAAACTTAA ATAACAGTAT ATGTTATTGT CATTTTGTGG -TAAACCTGC TAACATTTTC TTTCTGTCCT TT-TTTTTCC AATTTGTAAG GAAATCTACC ACTGTCGAAG
Consensus aaTC.ta.gt CCacacAAGT gct...Tctc tTgACA.Ttc tcgaaAaTGg gAgaagaaGa aTAAAactGt TtAtccTcca caaCTGcCtg .agaaccTC. gAgaccagca GAAATCTACC AcTgtCgAAG
261 390
MRPL22_CDS ACAAATAAAA TATAGCAAAG ACAAGATGTG GTATTTGGCA AAATTGATAC GA-GGAATGT CTATTGACCA GGCTTTGGCT CAGTTGGAAT TCAATGACAA AAAAGGGGCC AAAATAATTA AAG-AGGTTC
MRPL22_mRN ACAAATAAAA TATAGCAAAG ACAAGATGTG GTATTTGGCA AAATTGATAC GA-GGAATGT CTATTGACCA GGCTTTGGCT CAGTTGGAAT TCAATGACAA AAAAGGGGCC AAAATAATTA AAG-AGGTTC
MRPL22P1 AAAACTAAAA GACAGCAAAG ACAAGATGTT GTATTTGGCA AAATTGGTAG GA-GAAATGT CCACTGACCA GGCTTAG-CT CAACTGGGAT TCAGCGACAA AAA-GGGACC CAAATCATTA AAG-ATGTTC
MRPL22P2 ACAAATAAAA TATAGCAAAG ACAAGATGTG GTATTTGGCA AAATTGGTAA GCTGCAATGA CTATTACCAT ATAATTAATA ATTTAGGAAA GAAGCTATGA GTTCCCCTCC CCACCCCTCA CCCCAGGATT
Consensus AcAAaTAAAA tAtAGCAAAG ACAAGATGTg GTATTTGGCA AAATTGgTA. Ga.G.AATGt CtAtTgaCca ggctTtg.ct ca.ttGGaAt tcAgcgAcaA aaa.ggg.CC caAatcaTtA aag.AgGtTc
391 520
MRPL22_CDS TCTTAGAAGC ACAAGATATG ---GCAGTGA GAGACCATAA CGTGGAATTC AG--GTCCAA TTTATATATA G-CTGAGTCC ACCTCAGGAC GAGGCCAGTG CCTGAAACGC ATCCGCTACC ATGGCAGAGG
MRPL22_mRN TCTTAGAAGC ACAAGATATG ---GCAGTGA GAGACCATAA CGTGGAATTC AG--GTCCAA TTTATATATA G-CTGAGTCC ACCTCAGGAC GAGGCCAGTG CCTGAAACGC ATCCGCTACC ATGGCAGAGG
MRPL22P1 TCTTAGAAGC ACAAGACGTG ---GCAGTGA AAGACCACAA TGTGGAATTC AG--ATCTGG TTTATATATA AACTGAGTCC ACCTCAGGGG GAGGCCAGAT CCTGACAGGC TTCTGCTACC AAAGTAGAGG
MRPL22P2 TGAAAAATAA AAAAGATTTG TGAGGAATGT GATATAATTG GTAGGTTGTC AAAAGAATGA TTGTTCAGAG ATGTATGATT TTCCTTAATT TTCACCTTTT TCTGAGAAAC TAAATCACAT TGGATAGATA
Consensus TcttAgAagc AcAAGAt.TG ...GcAgTGa gAgAccAtaa .gtGGaatTC Ag..gtctga TTtaTatata a.cTgaGtcc acCtcagg.. gaggCCagtt cCTGA.A.gC ttc.gCtacc a.ggtAGAgg
521 650
MRPL22_CDS TCGCTTTGGG ATCATGGAGA AGGTTTATTG CCATTATTTT GTGAAGTTGG TGGAAGGGCC --CCCACCT- -CCACCTGAG CCACCAAAGA CGGC--AGTT GCCCATGCCA AAGAGTATAT --TCAGCAG-
MRPL22_mRN TCGCTTTGGG ATCATGGAGA AGGTTTATTG CCATTATTTT GTGAAGTTGG TGGAAGGGCC --CCCACCT- -CCACCTGAG CCACCAAAGA CGGC--AGTT GCCCATGCCA AAGAGTATAT --TCAGCAG-
MRPL22P1 TTGCTTTGGG ATCATGAAGG ----TTACTG CCATTATTTT ATGAAGCTGG TGGAAGGGCC TCCCCACCT- -CCACGTGAG GCACCCAAGA TGGCGAAGTC ACCCATACCA AAGAGTATAT ATTCAGAAGC
MRPL22P2 GATACTAAAA GGCATCAGGA -----GTTTG GCTATAACCA GAGAATCCAG GAAACCCACC TATTTATCTG TAAACTTGAT TCAACCTGTT T-----TAAA ACTGTTGCTT TTAAGTTTTT TTCCCTAGGA
Consensus t.gctTtggg atCATgaaGa ....ttatTG cCatTAtttt gtGAAgctgG tggAagggCC t.cccAcCT. .ccAC.TGAg .CAcCcaaga tggc..agt. aCccaTgCca aagAGTaTaT .ttCagaaG.
651 780
MRPL22_CDS TTCGCAGCCG GACCATCGTT CACACTCT-A TGATGAGGAG ATTCAG--AC TCCACAGTGT ATATATTTTG CCATTTATTT TCTAAAAATA AACAAAAATT GA
MRPL22_mRN TTCGCAGCCG GACCATCGTT CACACTCT-A TGATGAGGAG ATTCAG--AC TCCACAGTGT ATATATTTTG CCATTTATTT TCTAAAAATA AACAAAAATT GAAGGCAAAA AAAAAAAAAA AAAAAAAAAA
MRPL22P1 TTCAACACTG GACCATCACT CACACTATGA TGGGGCTGTG ATAACGGAAG ATCACTTAGT CTAGGAAAGA ACTCCTCCAT GTGCCATCAT AACCACTGTA GGGAGCAGGC AAGTCACTCA ACTTTTCAGA
MRPL22P2 AATGAAATTT ATAGAT-GAG GGGAGACTGA AGCAGCAAAT ATACATGTAA TACATTTATC CTATAGGAGA AGGAGATGCC TTGAATGCCT AG-TGTGGTT GTTACCAACC TGTGGTCTCT -CTGTCATGT
Consensus ttcgaaactg gaccATcg.t cacActcTgA tG..Gc.gag ATacagg.A. t.CActtagt cTAta..aga ac...t...t ttgaaa.c.t Aac.a..gTt G..a.caa.c ......ctc. .ct.t.a.g.
781 806
MRPL22_CDS
MRPL22_mRN AAA
MRPL22P1 TACTGCTGTC CATGTCTGTA AGATGG
MRPL22P2 T--TGCTGTC TTTTAATGTT A-TTG
Consensus t..tgctgtc ..t...tgt. a..tg.