Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 725 Check: 0 ..
Name: MRPL20_CDS Len: 725 Check: 3560 Weight: 1.49
Name: MRPL20_mRNA Len: 725 Check: 959 Weight: 0.75
Name: MRPL20P1 Len: 725 Check: 7410 Weight: 0.75
Name: Consensus Len: 725 Check: 3201 Weight: 0.00
//
1 130
MRPL20_CDS ATGGTCTTC CTCACCGCGC AGCTCTGGCT GCGGAATCGC GTCACCGACC GCTACTTTCG
MRPL20_mRN TGTTCG GGACGCCGGC CTGCAGGCGC CATGGTCTTC CTCACCGCGC AGCTCTGGCT GCGGAATCGC GTCACCGACC GCTACTTTCG
MRPL20P1 GACGCCCAGC AAGACGGCGG CAGCGCAGCG CGTGTGTTGT TGAGGATCCA GGACGCTGGC CCGCGGGCGT CTTGGTCTTC TTCACCGC-- ---------T GCGAAATCGC GTCACCTACC GCTACTGGCG
Consensus .......... .......... .......... .......... ......t.c. ggacgc.ggc c.gc.ggcg. caTGGTCTTC cTCACCGCgc agctctggcT GCGgAATCGC GTCACCgACC GCTACTttCG
131 260
MRPL20_CDS GATCCAGGAG GTGCTGAAGC ACGCCAGGCA CTTCCGGGGA AGGAA----- --------AA ATCGCTGCTA CAGGTTGGCG GTCAGAACCG TGATTCGAGC CTTTGTGAAA TGCACCAAAG CCCGATACCT
MRPL20_mRN GATCCAGGAG GTGCTGAAGC ACGCCAGGCA CTTCCGGGGA AGGAA----- --------AA ATCGCTGCTA CAGGTTGGCG GTCAGAACCG TGATTCGAGC CTTTGTGAAA TGCACCAAAG CCCGATACCT
MRPL20P1 GATTCGGGAG GTGCTGAAGC ACGCCAAGCA CTTCCGGCGG GGGAGCGGGG TGCGGGGGAA ATTGCTGCTA CAGGTTGGCG GTCAGAGCCG GGACTGGAGC CTTTGTGAAA TGCACCAAAG CCGGAAACCT
Consensus GATcCaGGAG GTGCTGAAGC ACGCCAgGCA CTTCCGGgGa aGGAa..... ........AA ATcGCTGCTA CAGGTTGGCG GTCAGAaCCG tGAtTcGAGC CTTTGTGAAA TGCACCAAAG CCcGAtACCT
261 390
MRPL20_CDS GAAGAAAAAG AACATGAGGA CCCTCTGGAT TAATCGAATT ACAGCTGCTA GCCAGGAACA TGGACTGAAG TATCCAGCGC TCATTGGGAA TTTAGTTAAG TGCCAGGTGG AGCTCAACAG GAAAGTCCTA
MRPL20_mRN GAAGAAAAAG AACATGAGGA CCCTCTGGAT TAATCGAATT ACAGCTGCTA GCCAGGAACA TGGACTGAAG TATCCAGCGC TCATTGGGAA TTTAGTTAAG TGCCAGGTGG AGCTCAACAG GAAAGTCCTA
MRPL20P1 GAAGAAGAGG ACCATGAGGA CCCTCTGGAT TAATCGAATT ACAGCTGCTA CCCAGGAACA CGGCCCGAAG TACCCAGCGT TCACTGGCAA TTTAATTAAG TGCCAGGTGA AGCGCCACAA GAAAGTCCCA
Consensus GAAGAAaAaG AaCATGAGGA CCCTCTGGAT TAATCGAATT ACAGCTGCTA gCCAGGAACA tGGaCtGAAG TAtCCAGCGc TCAtTGGgAA TTTAgTTAAG TGCCAGGTGg AGCtCaACAg GAAAGTCCtA
391 520
MRPL20_CDS GCGGATCTGG CCATCTACGA GCCAAAGACT TTCAAATCTT TGGCTGCCTT GGCCAGTAGG AGGCGACACG AAGGATTTGC TGCTGCCTTG GGGGATGGGA AGGAACCTGA AGGCATTTTT TCCAGAGTGG
MRPL20_mRN GCGGATCTGG CCATCTACGA GCCAAAGACT TTCAAATCTT TGGCTGCCTT GGCCAGTAGG AGGCGACACG AAGGATTTGC TGCTGCCTTG GGGGATGGGA AGGAACCTGA AGGCATTTTT TCCAGAGTGG
MRPL20P1 GCGAATCTGG CCATCTACGA ACCAGAGACT TTTAAATCTT TGGCTGCCTT GGCCAATAGG AGGCGACAGG AAGAATTTGC TGCTGCCTTA GGAGATGGGA AGGCAGCATA ------TTTT TCCAGAATGG
Consensus GCGgATCTGG CCATCTACGA gCCAaAGACT TTcAAATCTT TGGCTGCCTT GGCCAgTAGG AGGCGACAcG AAGgATTTGC TGCTGCCTTg GGgGATGGGA AGGaAcCtgA aggcatTTTT TCCAGAgTGG
521 650
MRPL20_CDS TGCAGTACCA CTGA
MRPL20_mRN TGCAGTACCA CTGAGGACTG TTGCTGTATT GATTAGGAAA AGAGACAGAG TAATTTGCAG TTTGTTTGAT TTATACTTTT GTTTATCTAC AACCCAATAA CAGACATGAG GGATGGCCCT GTCTCTCTGG
MRPL20P1 TACAGTACCG CTGAGGACCG TTGCTGTATT GACTAGGAAA AGACACAGAG TAATTTGCAT TTTATTTGAT TTGTGCTTGT GTTTATCCAC ATTCGAGTAA CAGGCATGAG GGAAGGCCCC TTCTCTCTGG
Consensus TgCAGTACCa CTGAggac.g ttgctgtatt ga.taggaaa aga.acagag taatttgca. ttt.tttgat tt.t.ctt.t gtttatc.ac a..c.a.taa cag.catgag gga.ggccc. .tctctctgg
651 725
MRPL20_CDS
MRPL20_mRN GACAGAGCCT CACAGATGAT GTCCATGTTT TGTGTGAATG AAACTCAA
MRPL20P1 GACAGAGCCT CACAGATGGC TTCCGTGTTT CGTGTGAATG AAACTCAAAC ATTGTTCGAA AAAAAAAATT GGGAG
Consensus gacagagcct cacagatg.. .tcc.tgttt .gtgtgaatg aaactcaa.. .......... .......... .....