Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1268 Check: 0 ..
Name: MRPL2_CDS Len: 1268 Check: 3781 Weight: 1.49
Name: MRPL2_mRNA Len: 1268 Check: 9475 Weight: 0.75
Name: MRPL2P1 Len: 1268 Check: 4735 Weight: 0.75
Name: Consensus Len: 1268 Check: 5271 Weight: 0.00
//
1 130
MRPL2_CDS ATGGCCCTG TGCGCACTGA CCCGCGCTCT GCGCTCTCTG AACCTGGCGC CCCCGACCGT
MRPL2_mRNA CAC- CGAGCAGCTT GGCTAAAAGT AAGGGTGTCG TG------CT GATGGCCCTG TGCGCACTGA CCCGCGCTCT GCGCTCTCTG AACCTGGCGC CCCCGACCGT
MRPL2P1 TTCATAGGTT TTCCATCTCA ATATTTCTCT CAAGAACACT AGCAGGAGTG TGATGAGCCC TGGCTATCCT GATGGCCCTG TGGGCACTGA CCTGCACTCT GCACTCTCTG AGCCTGGCAC CCCCGACCGT
Consensus .......... .......... ......c.c. c.ag.a...t .gc...a... ....g.g.c. tg......ct gATGGCCCTG TGcGCACTGA CCcGCgCTCT GCgCTCTCTG AaCCTGGCgC CCCCGACCGT
131 260
MRPL2_CDS CGCCGCCCCT GCCCCGAGTC TGTTCCCCGC CGCCCAGATG ATGAACAATG GCCTCCTCCA ACAGCCCTCT GCCTTGATGT TGCTCCCCTG CCGCCCAGTT CTTACTTCTG TGGCCCTTAA TGCCAACTTT
MRPL2_mRNA CGCCGCCCCT GCCCCGAGTC TGTTCCCCGC CGCCCAGATG ATGAACAATG GCCTCCTCCA ACAGCCCTCT GCCTTGATGT TGCTCCCCTG CCGCCCAGTT CTTACTTCTG TGGCCCTTAA TGCCAACTTT
MRPL2P1 TGCCACTTCT GTCCCGAGTC TGTTCCCTGC CTCCCAGGTG ATGAACAATG CCCTCTTCCA ATGGCCCTCT GCCTTGATGT TGCTCCCCTG CCACCAAATC CTTACTTCTA TGGCCCTTAG TGCCAACTTT
Consensus cGCCgCccCT GcCCCGAGTC TGTTCCCcGC CgCCCAGaTG ATGAACAATG gCCTCcTCCA AcaGCCCTCT GCCTTGATGT TGCTCCCCTG CCgCCcAgTt CTTACTTCTg TGGCCCTTAa TGCCAACTTT
261 390
MRPL2_CDS GTGTCCTGGA AGAGTCGTAC CAAGTACACC ATTACACCAG TGAAGATGAG GAAGTCTGGG GGCCGAGACC ACACAGGCCG AATCCGGGTG CATGGTATTG GCGGGGGCCA CAAGCAACGT TATCGAATGA
MRPL2_mRNA GTGTCCTGGA AGAGTCGTAC CAAGTACACC ATTACACCAG TGAAGATGAG GAAGTCTGGG GGCCGAGACC ACACAGGCCG AATCCGGGTG CATGGTATTG GCGGGGGCCA CAAGCAACGT TATCGAATGA
MRPL2P1 GTGCCTTGAA AGAGTCATAC CAAGTACACA ATTAAACCAG TGAAGATGAG GAAGTCTGGG GGTGAAGACC ACACAGGCCA GATCTGGGTG CACGGTATTG ACAGGGGCCA CAAGCAACAT TATTGCATGA
Consensus GTGtCcTGgA AGAGTCgTAC CAAGTACACc ATTAcACCAG TGAAGATGAG GAAGTCTGGG GGccgAGACC ACACAGGCCg aATCcGGGTG CAtGGTATTG gCgGGGGCCA CAAGCAACgT TATcGaATGA
391 520
MRPL2_CDS TTGACTTTCT GCGTTTCCGG CCTGAGGAG- --ACCAAGTC AGGACCCTTT GAGGAGAAGG TTATCCAAGT CCGCTATGAT CCCTGTAGGT CAGCAGACAT AGCTCTGGTT GCTGGGGGCA GCCGGAAACG
MRPL2_mRNA TTGACTTTCT GCGTTTCCGG CCTGAGGAG- --ACCAAGTC AGGACCCTTT GAGGAGAAGG TTATCCAAGT CCGCTATGAT CCCTGTAGGT CAGCAGACAT AGCTCTGGTT GCTGGGGGCA GCCGGAAACG
MRPL2P1 TTGACTTT-T GTGTTTCTGG CCTGAGGAGG AGACCAAGTC AGGACCCTTT GAGGAGAAGG TTATCCAAGT CCACCGTGAT CCCTGTAGGT CAGCAGACAT AGCTCTGGTT GCTGGGGGTA GCCAGAAACA
Consensus TTGACTTTcT GcGTTTCcGG CCTGAGGAG. ..ACCAAGTC AGGACCCTTT GAGGAGAAGG TTATCCAAGT CCgCtaTGAT CCCTGTAGGT CAGCAGACAT AGCTCTGGTT GCTGGGGGcA GCCgGAAACg
521 650
MRPL2_CDS CTGGATCATC GCCACAGAAA ACATGCAGGC TGGAGATACA ATCTTGAACT CTAACCACAT AGGCCGAATG GCAGTTGCTG CTCGGGAAGG GGATGCGCAT CCTCTTGGGG CTCTGCCTGT GGGGACCCTC
MRPL2_mRNA CTGGATCATC GCCACAGAAA ACATGCAGGC TGGAGATACA ATCTTGAACT CTAACCACAT AGGCCGAATG GCAGTTGCTG CTCGGGAAGG GGATGCGCAT CCTCTTGGGG CTCTGCCTGT GGGGACCCTC
MRPL2P1 CTGGATCATC ACCACAGAAA ACTTGCAGGC TGGAGATACA ATCCTGAACT CCAACCACAT AGGCCAAATG GCAGTTGCTG CTCAGGAAGG GGATGCACAT CCACTTGGGG CTCTGCCTGT GGGAACCCTC
Consensus CTGGATCATC gCCACAGAAA ACaTGCAGGC TGGAGATACA ATCtTGAACT CtAACCACAT AGGCCgAATG GCAGTTGCTG CTCgGGAAGG GGATGCgCAT CCtCTTGGGG CTCTGCCTGT GGGgACCCTC
651 780
MRPL2_CDS ATCAACAACG TGGAAAGTGA GCCAGGCCGG GGTGCCCAAT ATATCCGAGC TGCAGGGACG TGTGGTGTGC TACTGCGGAA GGTGAATGGC ACAGCCATTA TCCAGCTGCC CTCTAAGAGG CAGATGCAGG
MRPL2_mRNA ATCAACAACG TGGAAAGTGA GCCAGGCCGG GGTGCCCAAT ATATCCGAGC TGCAGGGACG TGTGGTGTGC TACTGCGGAA GGTGAATGGC ACAGCCATTA TCCAGCTGCC CTCTAAGAGG CAGATGCAGG
MRPL2P1 ATCAACAACA TGGAAATTGA GCCAGGCCGG GGTGCCCAGT ATATCCAAGC TGCAGGGACG TGTAGTGTGC TACTGTGGAA GGTGAATGGC ACAACCGTTA TCCAGCTGCC CTCTAAGAGG CAGATGCAGG
Consensus ATCAACAACg TGGAAAgTGA GCCAGGCCGG GGTGCCCAaT ATATCCgAGC TGCAGGGACG TGTgGTGTGC TACTGcGGAA GGTGAATGGC ACAgCCaTTA TCCAGCTGCC CTCTAAGAGG CAGATGCAGG
781 910
MRPL2_CDS TGCTGGAAAC GTGCGTAGCA ACAGTAGGCC GAGTATCCAA CGTTGATCAT AACAAACGGG TCATTGGCAA GGCAGGTCGC AACCGCTGGC TGGGCAAGAG GCCTAACAGT GGGCGGTGGC ACCGCAAGGG
MRPL2_mRNA TGCTGGAAAC GTGCGTAGCA ACAGTAGGCC GAGTATCCAA CGTTGATCAT AACAAACGGG TCATTGGCAA GGCAGGTCGC AACCGCTGGC TGGGCAAGAG GCCTAACAGT GGGCGGTGGC ACCGCAAGGG
MRPL2P1 TGCTGGAAAC ATGCATAGCA ACAGTAGGCT GAGTATCCAA CACTGATCAT AACAAACAGG TCACTGGCAG GGCAGGTCAC AACCGTTGGC TGGGCAAGAG GCCTTCCAGT GGGCTACAGC ACCACAAGGG
Consensus TGCTGGAAAC gTGCgTAGCA ACAGTAGGCc GAGTATCCAA CgtTGATCAT AACAAACgGG TCAtTGGCAa GGCAGGTCgC AACCGcTGGC TGGGCAAGAG GCCTaaCAGT GGGCggtgGC ACCgCAAGGG
911 1040
MRPL2_CDS GGGCTGGGCT GGCCGAAAGA TTCGGCCACT ACCCCCCATG AAGAGTTACG TGAAGCTGCC TTCTGCTTCT GCCCAAAGCT GA
MRPL2_mRNA GGGCTGGGCT GGCCGAAAGA TTCGGCCACT ACCCCCCATG AAGAGTTACG TGAAGCTGCC TTCTGCTTCT GCCCAAAGCT GATATCCCTG TACTCTAATA AAATGCCCCC CCCCCCCGTT TTAATCTGTT
MRPL2P1 GTGCTGGGCT GGCCGAAAGA TTTGGCCACT ACCCTTCATG AAGAGTTATG TGAAGCTGCC TTCTGATGCT GCCCAAAGCT GATATCCCTG TATTGTAATA ATGTGCCCCC CTCCCCTGAA AAAAAAAAAA
Consensus GgGCTGGGCT GGCCGAAAGA TTcGGCCACT ACCCccCATG AAGAGTTAcG TGAAGCTGCC TTCTGcTtCT GCCCAAAGCT GAtatccctg ta.t.taata a..tgccccc c.cccc.g.. ..aa......
1041 1170
MRPL2_CDS
MRPL2_mRNA ACTGTGGTT- TTGTTTTGGG TGTTTTTTGT TTTTTTTG-- --TTGTTGTT TTT----TTT TTGCGGGGGA GGGGATGGTA CAGACTAAAC GTGGGGAAAA GAAGTAAAAA GTGTGGAAGA GAAAGTACAG
MRPL2P1 AGAGCACTAG CAGGTTCTTG AGCAGCTGGA ACTCTTAGAA ACTTGCTGTT TTACCCCAAG TTTCCAGTAT GAGTATAGT- --GATTAGAT TCTCCTTCTT CTCATCTTTT CTCTTTCACT GGCCCT-CAA
Consensus a..g...t.. ..g.tt...g .g....t.g. ..t.tt.g.. ..ttg.tgtt tt........ tt.c..g... g.g.at.gt. ..ga.ta.a. .......... ....t..... .t.t...a.. g....t.ca.
1171 1268
MRPL2_CDS
MRPL2_mRNA GACACTGGGT CTGTCCCCAC CCCAATTCCC TTACAAGTAA TGGAGCCGGG GATGGAAATA AATGACGTCC AAGGTC
MRPL2P1 GGCACTTAAA ATAAAGCCAT TAATATTTCA TGGTAAACCT TTGTTTTTAT CATGCTCACT TCAGCAGCAC ATATACTAAA ATTGGAATAG TACAGAGA
Consensus g.cact.... .t....cca. ....att.c. t...aa.... t.g....... .atg...a.. ...g..g..c a....c.... .......... ........