Yale Gerstein Lab


Create your own list of pseudogenes

Each of the chromosome 22 pseudogenes is associated with 40 or so features, based on sequence analysis, conservation in related organisms, expression evidence and the presence of upstream regulatory sites. Here, we select some of these features and create a table interactively according to your investigation interest. These features include pseudogene preservation in mouse/rat/chimp, expression evidence derived from EST, PCR tiling array (Rinn, 1 or 0) and transcriptional factor binding site (0 -- absent). Transcription data of high resolution oligonucleotide tiling array are from the NASA array (nasa, 0 -- not detected) and the Affymetrix array (11 cell lines -- A375 to U87, a value of <0.05 means transcriptional activity is likely in the cell line).

Pick up features of your interest

MyIDPgene_startPgene_endStrandAA_identDNA_identCompletenessPolyADisableKaKs
ESTidEST_overlapMouse_preserveRat_preserveChimp_preservePgene_typerinnnfkbcrebcpg
nasatightnasaloosenasasignA375CEMCOLOFHSHEPJurkatNCCIT
OVCARPC3SK.newU87combo

Select pseudogenes with expression evidence from:

EST rinnnfkbcrebcpgnasatightnasaloosenasasignA375CEMCOLO
FHSHEPJurkatNCCITOVCARPC3SK.newU87combo
AND
meet this criterion:
Pgene_start Pgene_end AA_ident DNA_ident
15418418 15420063 0.34 NA
17233700 17234123 0.87 0.9915
18995306 18998924 0.85 0.83
20880745 20881091 0.7 0.76
41418566 41420729 0.71 0.66
20758904 20759189 0.66 0.76
15959061 15960213 0.38 0.39
20717762 20718031 0.59 0.72
43324335 43324988 0.67 0.79
17129575 17129793 0.86 0.90
24070062 24070843 0.91 0.9167
19033293 19033733 0.58 0.64
15867848 15868403 0.57 0.70
27793784 27794681 0.38 0.39
17600520 17600816 0.69 0.83
37361788 37362548 0.91 0.92
48641505 48643029 0.38 0.30
40553201 40553743 0.56 0.61
31105997 31106164 0.71 NA
21365164 21365469 0.91 0.91
41719077 41719474 0.79 0.89
22607813 22607992 0.47 0.61
20145337 20145816 0.97 0.99
48786245 48787206 0.28 0.36
21335549 21335830 1 NA
37953727 37953897 0.86 0.79
22673057 22673353 0.48 0.57
19947004 19947748 0.97 0.98
15056814 15057026 0.79 0.80
20985740 20986234 0.88 0.76
30611269 30611555 0.82 0.90
15692906 15693109 0.66 0.74
21978388 21978693 0.96 0.98
19722947 19723141 0.75 0.84
15293567 15293737 0.86 0.94
21361835 21362107 0.74 0.79
23557506 23557736 0.69 NA
45677675 45679112 0.27 0.38
39072179 39072687 0.695 0.9011
33558945 33559525 0.44 0.50
21099690 21100201 0.75 0.79
18964483 18964897 0.68 0.74
22326088 22326381 0.84 NA
19359427 19359606 0.85 0.91
30611655 30611980 0.83 0.74
21144599 21144814 0.5 0.65
21517102 21517359 0.72 0.76
20790993 20791258 0.64 0.73
48430152 48430696 0.56 0.73
28825643 28825951 0.77 0.84
42959866 42961507 0.32 0.38
19866138 19866462 0.32 0.44
23411606 23411743 0.67 0.70
25365408 25365863 0.88 0.92
18249366 18250047 0.63 0.63
19794722 19795027 0.97 0.99
30920462 30920772 0.76 0.86
15428490 15428972 0.975 0.9824
34452517 34452612 0.88 0.93
21486522 21486806 0.88 0.92
19368873 19370156 0.93 0.97
29925859 29926069 0.99 NA
14764039 14764176 0.67 0.84
30406094 30406345 0.47 0.56
19862532 19863153 0.41 0.49
21452714 21453312 0.66 0.81
29201867 29202452 0.62 0.74
21125673 21127230 0.72 0.75
22103950 22104297 0.53 0.9841
40348228 40348628 0.77 0.83
43896109 43896459 0.31 0.43
21049804 21050019 0.53 NA
19036630 19037228 0.45 0.54
16938784 16938903 0.68 0.83
19852274 19852384 0.89 0.95
17667531 17668622 0.36 NA
21356768 21357036 0.53 NA
19055980 19056096 0.85 NA
22588819 22589250 0.43 NA
14739422 14740758 0.89 0.94
17486943 17487733 0.77 0.86
37709431 37709714 0.78 0.89
15470455 15470592 0.7 0.74
29245895 29246474 0.973 0.69
19040659 19041005 0.64 0.77
40776780 40778579 0.402 0.44
21340376 21340662 0.68 NA
48107298 48107564 0.48 0.48
15315224 15315849 0.37 0.45
19880593 19880811 0.86 0.90
15289648 15289758 0.95 0.96
16876720 16877040 0.75 0.84
37214356 37214475 0.68 0.79
14565881 14566206 0.41 0.50
42413281 42414102 0.49 0.63
39225746 39227037 0.8 0.79
15450530 15450932 0.95 0.97
47829168 47829542 0.82 0.89
21554788 21555033 0.63 0.75
21285944 21286209 0.69 NA
21490041 21490337 1 0.9569
24101859 24102110 0.72 0.83
21129094 21129541 0.83 0.67
15304634 15308440 0.87 0.91
14650461 14650662 0.65 0.82
40778971 40779431 0.78 0.9756
15900317 15900445 0.72 0.86
14604552 14605769 0.55 0.66
41412317 41412851 0.47 0.54
24170974 24171549 0.64 0.69
29163259 29164310 0.74 0.8571
21539946 21540227 0.57 NA
48458881 48459074 0.69 0.78
31615423 31615763 0.75 NA
29622695 29623319 0.86 0.67
48492500 48493212 0.22 0.37
15809336 15809528 0.56 0.74
19023318 19023428 0.92 0.96
22720753 22720932 0.43 0.59
30917612 30917953 0.48 0.63
19369882 19370711 0.69 0.9223
21111062 21111355 1 NA
43948046 43948529 0.76 0.85
19268486 19269463 0.74 0.71
39427823 39428310 0.86 0.90
46621022 46621222 0.84 0.89
17156481 17156871 0.98 0.9959
15364159 15364465 0.67 0.72
17077882 17081512 0.85 0.83
38323670 38324765 0.41 0.36
45196920 45197784 0.36 0.40
39121492 39121719 1 NA
17418105 17418399 0.65 0.75
15501890 15502058 0.98 0.93
44464860 44466110 0.69 0.76
22410559 22411536 0.64 0.67
22040327 22040494 0.91 0.93
18706558 18706668 0.89 0.95
22989874 22990233 0.85 0.92
14634139 14634759 0.39 0.56
18965032 18965630 0.47 0.25
18874487 18878038 0.85 0.85
33309631 33311823 0.86 0.90
20782655 20783760 0.625 0.8953
15393124 15393480 0.54 NA
21031968 21032317 0.77 0.83
42232808 42234163 0.32 0.37
28329443 28330041 0.84 0.9244
48371278 48371961 0.83 0.91
34840228 34840595 0.63 NA
42101556 42101821 0.78 0.68
19331574 19333609 0.68 0.79
22064147 22064265 0.9 NA
18033153 18033851 0.42 NA
18717961 18718435 0.89 0.90
21247034 21247339 0.83 0.89
15061493 15061799 0.76 0.86
17380110 17380983 0.78 0.88
22963574 22963785 0.83 0.83
48097721 48098172 0.56 0.68
37696331 37696658 0.69 0.76
16631719 16632194 0.55 0.9338
25281890 25282072 0.8 0.90
27556441 27556679 0.72 0.85
37955702 37955884 0.64 0.68
46860064 46860892 0.36 0.39
31736384 31736724 0.71 0.79
30258894 30259278 0.5 0.61
35176340 35176690 0.84 0.92
32816682 32816831 0.79 0.79
15242945 15243121 0.76 0.86
41705768 41706271 0.34 0.38
17231651 17231975 0.32 0.45
37957448 37957636 0.79 0.75
21077639 21077905 0.53 0.66
14779254 14780430 0.965 0.90
29374829 29375355 0.81 0.8847
44988509 44988740 0.73 0.80
16960712 16960963 0.57 0.71
22037075 22037227 0.67 0.76
14580744 14581182 0.48 0.63
22722171 22722326 0.54 0.65
15493992 15494233 0.64 0.77
23376252 23376818 0.64 0.77
20737444 20737739 0.54 0.69
18946851 18947069 0.86 0.90
21439343 21439627 0.87 0.92
22383824 22384036 0.73 0.85
33769295 33770002 0.27 0.19
31285112 31285710 0.52 0.47
16761900 16762112 0.87 0.8696
49325505 49326267 0.98 0.99
27793237 27795137 0.35 0.35
34170541 34171445 0.885 0.73
48648873 48649948 0.35 0.38
19820470 19821214 0.97 0.97
15731612 15731767 0.69 NA
30854568 30854672 0.74 NA
15776874 15777198 0.84 0.86
21397650 21398153 0.53 0.72
20902136 20902624 0.98 0.99
18661837 18662112 0.85 0.93
21547845 21548117 1 NA
18963262 18963666 0.99 1.00
23898602 23899356 0.95 0.94
20893875 20894210 0.55 0.67
31910891 31911229 0.38 0.42
20224906 20228403 0.99 1.00
21405964 21406234 0.67 NA
37650209 37650316 0.69 0.85
15949062 15949381 0.69 0.83
21354010 21354294 1 0.89
18674958 18675530 0.82 0.69
14800278 14801615 0.92 0.83
42812141 42812371 0.51 0.58
20882420 20883007 0.74 0.66
17342738 17342854 0.69 0.79
49102149 49102618 0.98 NA
31107209 31107409 0.63 0.79
15284256 15284495 0.76 0.88
15736230 15736518 0.61 0.65
45222887 45223103 0.58 NA
34371663 34372024 0.69 0.83
37954397 37954617 0.68 0.71
20847289 20847581 0.58 0.72
39703095 39703676 0.95 0.97
14636483 14636683 0.72 0.85
47881086 47881649 0.53 0.59
49250333 49251186 0.37 0.42
21055087 21055410 0.83 0.88
39713210 39714282 0.87 0.86
20722653 20722927 0.39 NA
20705213 20705527 0.66 0.75
43155940 43156181 0.85 0.92
18751577 18752056 0.97 0.99
17234963 17235584 0.43 0.50
22675283 22675444 0.5 0.62
23407509 23408609 0.92 0.93
31887193 31887438 0.31 0.46
15002424 15002985 0.68 NA
18087537 18089741 0.34 0.35
43289277 43290758 0.25 NA
17220452 17220757 0.97 0.99
14596484 14597164 0.85 0.90
14657747 14657887 0.91 0.94
15723095 15723619 0.93 0.96
39436947 39437328 0.55 0.62
15552208 15553599 0.94 0.96
49102436 49102912 0.38 0.44
39312530 39313491 0.79 0.85
21985215 21985871 0.5 0.50
29839001 29840210 0.34 0.41
15245415 15246164 0.927 0.9708
15288620 15288775 0.94 0.94
24038779 24038925 0.8 0.84
43771554 43771859 0.75 0.86
49369489 49369949 0.85 0.90
14582106 14582516 0.51 0.59
49256138 49257850 0.42 0.33
49003406 49005808 0.32 0.33
37956454 37956624 0.77 0.8605
30989922 30993648 0.83 0.78
25147647 25148864 0.41 0.38
15509332 15509523 0.91 0.95
43395459 43395728 0.7 0.79
18587713 18588116 0.53 0.47
19757759 19758335 0.74 NA
22724762 22724854 0.94 0.96
21331674 21331964 0.84 NA
40640118 40641009 0.87 0.91
22307050 22307166 0.92 0.94
21582347 21582653 0.77 0.83
21045241 21046695 0.69 0.77
35854820 35854968 0.84 0.91
22026348 22026494 0.88 0.92
48214966 48215808 0.34 NA
34840915 34841209 0.77 0.86
15030920 15031273 0.38 0.60
16278016 16278392 0.59 0.71
40746811 40747996 0.97 0.98
36444591 36445172 1 NA
20849925 20850496 0.62 0.73
38745365 38746105 0.88 0.92
14776727 14776903 0.88 0.91
20766890 20767228 0.5 0.69
43498214 43498450 0.41 0.43
14861812 14862075 0.56 0.71
41403353 41404240 0.93 0.96
20737528 20737895 0.51 1
21429338 21429610 0.77 0.78
22274894 22275145 0.58 0.79
15731902 15732346 0.71 0.73
23423872 23424120 0.61 0.76
16069199 16069497 0.78 0.84
48610343 48610444 0.68 0.84
17266726 17266933 0.78 NA
37422239 37422763 0.4 NA
38389618 38390337 0.765 0.78
17245469 17245579 0.89 0.95
22277070 22277279 0.53 0.63
14659167 14659298 0.86 0.85
30537672 30537938 0.76 0.88
21382284 21382491 0.62 0.70
22606739 22606894 0.54 0.65
21846636 21846946 0.8 0.79
16048349 16048752 0.85 0.89
41266913 41267221 0.87 0.94
30241742 30242150 0.75 0.78
22719233 22719436 0.38 0.51
14464249 14464833 0.92 0.97
41480342 41480860 0.71 0.81
46653808 46654169 0.71 0.78
19973174 19973479 0.98 0.99
43085929 43086385 0.59 0.59
49369480 49369719 0.91 0.96
17992801 17994244 0.765 0.8716
26883596 26884207 0.37 0.49
19415433 19415843 0.36 NA
20858177 20858461 0.53 0.68
24157878 24158223 0.57 0.70
15279809 15281314 0.66 0.67
40595854 40596543 0.735 0.67
14607028 14607745 0.44 0.56
14715961 14716506 0.73 0.22
20878002 20878273 0.53 0.66
23485086 23485291 0.53 0.57
43239412 43240693 0.83 0.88
23367474 23367779 0.96 0.98
47256830 47257954 0.34 0.38
45945921 45946237 0.69 0.83
19035031 19035632 0.44 0.57
31898702 31899143 0.45 NA
15397246 15397770 0.92 0.96
21586260 21586581 0.96 0.94
14810905 14811081 0.67 0.84
17115110 17115434 0.32 0.45
21524755 21525000 0.62 NA
28857219 28857948 0.71 0.79
18846888 18846956 0.96 0.99
43472938 43473530 0.35 0.33
21328325 21328604 0.71 0.81
41902024 41902395 0.97 NA
34565127 34566265 0.85 0.92
20749439 20749787 0.69 0.73
21018573 21020113 0.71 0.76
22127092 22127507 0.93 0.97
20710099 20710401 0.65 0.70
34159208 34160044 0.34 0.40
17195763 17196507 0.98 0.98
22667920 22668075 0.56 0.66
18935019 18935231 0.76 0.82
15682995 15684657 0.74 0.885
21231926 21232192 0.58 0.9375
14736907 14737210 0.68 0.74
42904503 42904860 0.86 0.92
25352408 25352581 0.56 0.64
30879347 30879756 0.59 0.70
22305368 22305848 0.68 0.72
20020439 20024098 0.85 0.81
21083146 21083599 0.94 0.71
30280026 30280476 0.81 0.90
21387908 21388195 1 NA
16371586 16372745 0.73 0.74
22330755 22331763 0.87 0.93
21422599 21422878 0.7 0.82
19727871 19728050 0.81 0.83
22033019 22033171 0.88 0.95
42611174 42611525 0.87 0.93
21401838 21402140 0.89 NA
21505335 21505620 0.61 NA
19267647 19268430 0.37 0.32
17347820 17348085 0.69 0.76
37566590 37566872 0.65 0.28
18716586 18717155 0.58 0.8605
48515370 48516062 0.49 0.35
28154980 28155546 0.53 0.65
15260602 15260697 0.94 0.96
14581782 14582208 0.46 0.61
20858064 20858404 0.58 0.70
20765692 20765973 0.67 0.82
38115253 38115582 1 NA
21441534 21441741 0.64 0.71
45819680 45820455 0.33 0.37
18154407 18155150 0.85 0.89
33230195 33231045 0.31 0.41
22410547 22411878 0.53 0.9
22727962 22728123 0.5 0.62
15759671 15759961 0.94 0.98
45784123 45785698 0.32 0.38
19377611 19377784 0.91 0.95
23406431 23407200 0.84 0.90
15713064 15716173 0.88 0.92
46270945 46271222 0.72 0.83
20564117 20564566 0.89 0.90
20834530 20834800 0.51 0.56
15617242 15617502 0.7 0.80
44822328 44823203 0.39 0.37
49251823 49252649 0.39 0.43
22350466 22350611 0.58 NA
22115192 22116050 0.39 0.39
18734609 18734827 0.86 0.90
20064118 20067618 0.99 1.00
45223474 45225003 0.37 0.39
20711865 20712146 0.53 0.66
20907657 20909427 0.47 0.23
19754804 19755130 0.71 0.83
17111621 17112190 0.57 0.60
41651634 41651813 0.8 0.89
14726617 14727980 0.913 0.9466
48097671 48098122 0.56 0.9474
30852858 30853046 0.86 0.95
42785666 42785806 0.62 0.65
21417466 21417683 0.6 NA
35589611 35589805 0.69 NA
20754272 20754617 0.61 0.73
22317990 22318291 0.65 0.80
22674551 22675381 0.32 NA
31865740 31866197 0.52 NA
21654993 21655312 0.88 0.95
21523492 21523798 0.83 0.88
14662125 14662612 0.85 0.9602
20864886 20865560 0.77 0.85
15531157 15531487 0.67 0.79
15752889 15752990 1 0.99
15328143 15328271 0.93 0.96
15902765 15902890 0.9 0.90
29253063 29253400 0.725 0.8814
42457048 42457292 0.76 0.87
14551942 14552121 0.88 0.91
45089467 45089874 0.82 0.91
20740196 20740529 0.47 0.58
19863894 19864350 0.9 0.997
29833558 29833933 0.84 0.88
18935616 18935835 0.77 0.79
20836336 20836603 0.64 0.74
22135463 22135648 0.39 0.58
17111358 17111983 0.5 0.25
18975301 18975411 0.89 0.95
16763707 16764132 0.65 0.67
19037197 19037785 0.4 0.50
30707515 30707736 0.93 NA
19187235 19187442 0.64 0.9778
16272298 16273429 0.765 0.9407
31097386 31097692 0.61 0.76
30760030 30760434 0.9 0.93
15781386 15781640 0.58 0.75
19161659 19162946 0.84 0.90
21577530 21577801 0.63 0.78
44979898 44980737 0.41 0.36
49101544 49101903 0.5 0.47
37588372 37588678 0.68 NA
43169312 43169783 0.42 0.48
39828770 39829231 0.81 0.89
21452711 21453294 0.68 0.83
21261803 21262081 0.71 NA
14502720 14503765 0.93 0.96
14456056 14456172 0.79 0.84
21255417 21255722 0.69 0.81
37794580 37795140 0.83 0.85
30988841 30989119 0.54 0.70
15876826 15878019 0.303 0.49
48786401 48787224 0.39 0.39
14788259 14790502 0.94 0.95
32094255 32094590 0.69 0.77
22989871 22990654 0.82 0.9265
45783625 45786116 0.31 0.32
24018277 24019089 0.73 0.70
26313623 26314222 0.34 0.42
24063492 24064496 0.87 0.93
22726240 22726356 0.97 0.99
29876509 29877183 0.61 0.73
20793619 20794194 0.94 0.96
31077217 31077529 0.76 0.84
25143061 25143713 0.79 0.82
46989338 46989703 0.3 NA
21501558 21501869 0.53 0.64
15329380 15329523 0.98 1.00
18383850 18383960 1 NA
21371574 21371846 0.8 0.79
22698084 22698340 0.76 0.77
43574043 43574872 0.83 0.81
20722572 20722861 0.49 NA
18716346 18716971 0.45 0.27
19039179 19039774 0.47 0.55
34846623 34846930 0.68 NA
49253395 49254121 0.37 0.37
25607425 25608065 0.89 0.90
17359178 17359662 0.69 0.80
18660417 18661710 0.35 0.37
33885146 33885442 0.77 0.82
21989281 21989772 0.68 0.76
20841306 20841605 0.64 0.70
43988020 43988247 0.42 0.50
31050719 31051403 0.37 NA
48141230 48142494 0.37 0.40
21589319 21589636 0.94 0.94
41413052 41413280 0.7 0.61
42804601 42805088 0.64 0.69
21271923 21272207 0.66 NA
33915264 33915489 0.79 0.90
21306147 21306809 0.47 0.49
47362387 47362509 0.78 NA
24726909 24727052 0.77 0.87
23355479 23355691 0.8 0.86
19040095 19040454 0.52 1
21414673 21414957 0.93 0.88
37759336 37759608 0.66 0.85
20048885 20049773 0.685 0.9862
21006430 21006720 0.93 0.95
48767564 48768059 0.35 0.33
19317913 19318059 0.8 0.86
44703364 44704063 0.42 0.40
40315788 40316168 0.91 0.99
14530951 14531353 0.84 0.92
19863944 19864418 0.9 0.91
21048570 21049006 0.95 0.73
20861503 20861830 0.59 0.66
31580560 31580974 1 NA
16958924 16959212 0.66 0.28
19907604 19907994 0.98 0.9959
21470040 21470378 0.44 0.56
15788955 15789258 0.79 0.80
40640924 40641076 0.82 0.91
43859481 43859800 0.96 NA
19373573 19373839 0.82 0.84